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Cluster: HRGMv2_1554_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1554_14 HRGMv2_1554_14_13 14434 14772 - 4.A.3.1.2
TF HRGMv2_1554_14 HRGMv2_1554_14_14 14987 15991 - LacI
TC HRGMv2_1554_14 HRGMv2_1554_14_15 16348 18123 + 4.A.3.1.1
CAZyme HRGMv2_1554_14 HRGMv2_1554_14_16 18190 19629 + GH1
TF HRGMv2_1554_14 HRGMv2_1554_14_17 19898 20935 - LacI
CAZyme HRGMv2_1554_14 HRGMv2_1554_14_18 21277 22719 + GH1
TC HRGMv2_1554_14 HRGMv2_1554_14_19 22895 24655 + 4.A.3.1.1
TF HRGMv2_1554_14 HRGMv2_1554_14_20 24989 25999 - LacI
TC HRGMv2_1554_14 HRGMv2_1554_14_21 26276 28054 + 4.A.3.1.1
CAZyme HRGMv2_1554_14 HRGMv2_1554_14_22 28131 29552 + GH1
Gene ID: HRGMv2_1554_14_13
Type: TC
Location: 14434 - 14772 (-)
Gene ID: HRGMv2_1554_14_14
Type: TF
Location: 14987 - 15991 (-)
Gene ID: HRGMv2_1554_14_15
Type: TC
Location: 16348 - 18123 (+)
Gene ID: HRGMv2_1554_14_16
Type: CAZyme
Location: 18190 - 19629 (+)
Gene ID: HRGMv2_1554_14_17
Type: TF
Location: 19898 - 20935 (-)
Gene ID: HRGMv2_1554_14_18
Type: CAZyme
Location: 21277 - 22719 (+)
Gene ID: HRGMv2_1554_14_19
Type: TC
Location: 22895 - 24655 (+)
Gene ID: HRGMv2_1554_14_20
Type: TF
Location: 24989 - 25999 (-)
Gene ID: HRGMv2_1554_14_21
Type: TC
Location: 26276 - 28054 (+)
Gene ID: HRGMv2_1554_14_22
Type: CAZyme
Location: 28131 - 29552 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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