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Cluster: HRGMv2_1554_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1554_65 HRGMv2_1554_65_6 3806 4975 - CE9
STP HRGMv2_1554_65 HRGMv2_1554_65_7 5094 6260 - SIS | SIS
TF HRGMv2_1554_65 HRGMv2_1554_65_8 6375 7106 - GntR
TC HRGMv2_1554_65 HRGMv2_1554_65_9 7291 8373 - 4.A.6.1.4
TC HRGMv2_1554_65 HRGMv2_1554_65_10 8363 9163 - 4.A.6.1.4
TC HRGMv2_1554_65 HRGMv2_1554_65_11 9254 9736 - 4.A.6.1.4
pfam HRGMv2_1554_65 HRGMv2_1554_65_12 9773 10054 - YajC
TC HRGMv2_1554_65 HRGMv2_1554_65_13 10054 10497 - 4.A.6.1.16
Gene ID: HRGMv2_1554_65_6
Type: CAZyme
Location: 3806 - 4975 (-)
Gene ID: HRGMv2_1554_65_7
Type: STP
Location: 5094 - 6260 (-)
Gene ID: HRGMv2_1554_65_8
Type: TF
Location: 6375 - 7106 (-)
Gene ID: HRGMv2_1554_65_9
Type: TC
Location: 7291 - 8373 (-)
Gene ID: HRGMv2_1554_65_10
Type: TC
Location: 8363 - 9163 (-)
Gene ID: HRGMv2_1554_65_11
Type: TC
Location: 9254 - 9736 (-)
Gene ID: HRGMv2_1554_65_12
Type: pfam
Location: 9773 - 10054 (-)
Gene ID: HRGMv2_1554_65_13
Type: TC
Location: 10054 - 10497 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1554_65_12 vegan > omnivore 1.08433 0.01057

🧭 Explore Read Mapping of CGC

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