Cluster: HRGMv2_1554_CGC1
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_1554
- CGC Family ID: CGCFAM_01608
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1554_3 | HRGMv2_1554_3_3 | 3614 | 7096 | + | CBM13 | CBM13 |
| pfam | HRGMv2_1554_3 | HRGMv2_1554_3_4 | 7391 | 9127 | - | CW_binding_2 | CW_binding_2 | CW_binding_2 |
| TC | HRGMv2_1554_3 | HRGMv2_1554_3_5 | 9377 | 10165 | - | 3.A.1.103.1 |
| TC | HRGMv2_1554_3 | HRGMv2_1554_3_6 | 10175 | 11020 | - | 3.A.1.103.6 |
| CAZyme | HRGMv2_1554_3 | HRGMv2_1554_3_7 | 11174 | 14185 | - | GT111 | GT2 | GT8 |
| CAZyme | HRGMv2_1554_3 | HRGMv2_1554_3_8 | 14283 | 15212 | - | GT81 |
| pfam | HRGMv2_1554_3 | HRGMv2_1554_3_9 | 15229 | 16935 | - | DUF6020 |
| TC | HRGMv2_1554_3 | HRGMv2_1554_3_10 | 17117 | 18148 | - | 9.B.97.1.2 |
| CAZyme | HRGMv2_1554_3 | HRGMv2_1554_3_11 | 18173 | 23146 | - | CBM13 | CBM13 | CBM13 | CBM13 | GH25 |
| CAZyme | HRGMv2_1554_3 | HRGMv2_1554_3_12 | 23168 | 25618 | - | CBM13 | CBM13 | CBM13 | CBM13 |
| CAZyme | HRGMv2_1554_3 | HRGMv2_1554_3_13 | 25649 | 29173 | - | CBM13 | CBM13 | CBM13 | CBM13 | CBM13 |
| CAZyme | HRGMv2_1554_3 | HRGMv2_1554_3_14 | 29245 | 32625 | - | CBM13 | CBM13 | CBM13 | CBM13 | CBM13 |
| CAZyme | HRGMv2_1554_3 | HRGMv2_1554_3_15 | 33007 | 36405 | - | CBM13 | CBM13 | CBM13 | CBM13 |
| pfam | HRGMv2_1554_3 | HRGMv2_1554_3_16 | 36511 | 37458 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | HRGMv2_1554_3 | HRGMv2_1554_3_17 | 37475 | 38698 | - | GT4 |
| CAZyme | HRGMv2_1554_3 | HRGMv2_1554_3_18 | 38725 | 39855 | - | GT2 |
Gene ID: HRGMv2_1554_3_3
Type: CAZyme
Location: 3614 - 7096 (+)
Type: CAZyme
Location: 3614 - 7096 (+)
Gene ID: HRGMv2_1554_3_4
Type: pfam
Location: 7391 - 9127 (-)
Type: pfam
Location: 7391 - 9127 (-)
Gene ID: HRGMv2_1554_3_5
Type: TC
Location: 9377 - 10165 (-)
Type: TC
Location: 9377 - 10165 (-)
Gene ID: HRGMv2_1554_3_6
Type: TC
Location: 10175 - 11020 (-)
Type: TC
Location: 10175 - 11020 (-)
Gene ID: HRGMv2_1554_3_7
Type: CAZyme
Location: 11174 - 14185 (-)
Type: CAZyme
Location: 11174 - 14185 (-)
Gene ID: HRGMv2_1554_3_8
Type: CAZyme
Location: 14283 - 15212 (-)
Type: CAZyme
Location: 14283 - 15212 (-)
Gene ID: HRGMv2_1554_3_9
Type: pfam
Location: 15229 - 16935 (-)
Type: pfam
Location: 15229 - 16935 (-)
Gene ID: HRGMv2_1554_3_10
Type: TC
Location: 17117 - 18148 (-)
Type: TC
Location: 17117 - 18148 (-)
Gene ID: HRGMv2_1554_3_11
Type: CAZyme
Location: 18173 - 23146 (-)
Type: CAZyme
Location: 18173 - 23146 (-)
Gene ID: HRGMv2_1554_3_12
Type: CAZyme
Location: 23168 - 25618 (-)
Type: CAZyme
Location: 23168 - 25618 (-)
Gene ID: HRGMv2_1554_3_13
Type: CAZyme
Location: 25649 - 29173 (-)
Type: CAZyme
Location: 25649 - 29173 (-)
Gene ID: HRGMv2_1554_3_14
Type: CAZyme
Location: 29245 - 32625 (-)
Type: CAZyme
Location: 29245 - 32625 (-)
Gene ID: HRGMv2_1554_3_15
Type: CAZyme
Location: 33007 - 36405 (-)
Type: CAZyme
Location: 33007 - 36405 (-)
Gene ID: HRGMv2_1554_3_16
Type: pfam
Location: 36511 - 37458 (-)
Type: pfam
Location: 36511 - 37458 (-)
Gene ID: HRGMv2_1554_3_17
Type: CAZyme
Location: 37475 - 38698 (-)
Type: CAZyme
Location: 37475 - 38698 (-)
Gene ID: HRGMv2_1554_3_18
Type: CAZyme
Location: 38725 - 39855 (-)
Type: CAZyme
Location: 38725 - 39855 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.