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Cluster: HRGMv2_1553_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1553_37 HRGMv2_1553_37_5 3357 3800 + 4.A.6.1.16
pfam HRGMv2_1553_37 HRGMv2_1553_37_6 3800 4081 + YajC
TC HRGMv2_1553_37 HRGMv2_1553_37_7 4118 4600 + 4.A.6.1.4
TC HRGMv2_1553_37 HRGMv2_1553_37_8 4691 5491 + 4.A.6.1.4
TC HRGMv2_1553_37 HRGMv2_1553_37_9 5481 6563 + 4.A.6.1.4
TF HRGMv2_1553_37 HRGMv2_1553_37_10 6748 7479 + GntR
STP HRGMv2_1553_37 HRGMv2_1553_37_11 7594 8760 + SIS | SIS
CAZyme HRGMv2_1553_37 HRGMv2_1553_37_12 8879 10048 + CE9
Gene ID: HRGMv2_1553_37_5
Type: TC
Location: 3357 - 3800 (+)
Gene ID: HRGMv2_1553_37_6
Type: pfam
Location: 3800 - 4081 (+)
Gene ID: HRGMv2_1553_37_7
Type: TC
Location: 4118 - 4600 (+)
Gene ID: HRGMv2_1553_37_8
Type: TC
Location: 4691 - 5491 (+)
Gene ID: HRGMv2_1553_37_9
Type: TC
Location: 5481 - 6563 (+)
Gene ID: HRGMv2_1553_37_10
Type: TF
Location: 6748 - 7479 (+)
Gene ID: HRGMv2_1553_37_11
Type: STP
Location: 7594 - 8760 (+)
Gene ID: HRGMv2_1553_37_12
Type: CAZyme
Location: 8879 - 10048 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1553_37_6 vegan > omnivore 1.16080 0.00566

🧭 Explore Read Mapping of CGC

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