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Cluster: HRGMv2_1553_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1553_6 HRGMv2_1553_6_2 965 2395 - GH1
pfam HRGMv2_1553_6 HRGMv2_1553_6_3 2806 3714 - ROK
CAZyme HRGMv2_1553_6 HRGMv2_1553_6_4 3739 5226 - GH1
TC HRGMv2_1553_6 HRGMv2_1553_6_5 5312 5653 - 4.A.3.2.1
TC HRGMv2_1553_6 HRGMv2_1553_6_6 5656 5952 - 4.A.3.2.6
TC HRGMv2_1553_6 HRGMv2_1553_6_7 6001 7293 - 4.A.3.2.2
pfam HRGMv2_1553_6 HRGMv2_1553_6_8 7448 8215 - YdjC
TF HRGMv2_1553_6 HRGMv2_1553_6_9 8503 9324 + HTH_6
CAZyme HRGMv2_1553_6 HRGMv2_1553_6_10 9345 10733 - GH1
Gene ID: HRGMv2_1553_6_2
Type: CAZyme
Location: 965 - 2395 (-)
Gene ID: HRGMv2_1553_6_3
Type: pfam
Location: 2806 - 3714 (-)
Gene ID: HRGMv2_1553_6_4
Type: CAZyme
Location: 3739 - 5226 (-)
Gene ID: HRGMv2_1553_6_5
Type: TC
Location: 5312 - 5653 (-)
Gene ID: HRGMv2_1553_6_6
Type: TC
Location: 5656 - 5952 (-)
Gene ID: HRGMv2_1553_6_7
Type: TC
Location: 6001 - 7293 (-)
Gene ID: HRGMv2_1553_6_8
Type: pfam
Location: 7448 - 8215 (-)
Gene ID: HRGMv2_1553_6_9
Type: TF
Location: 8503 - 9324 (+)
Gene ID: HRGMv2_1553_6_10
Type: CAZyme
Location: 9345 - 10733 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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