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Cluster: HRGMv2_1552_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1552_9 HRGMv2_1552_9_17 16622 17791 - CE9
STP HRGMv2_1552_9 HRGMv2_1552_9_18 17911 19077 - SIS | SIS
TF HRGMv2_1552_9 HRGMv2_1552_9_19 19192 19923 - GntR
TC HRGMv2_1552_9 HRGMv2_1552_9_20 20108 21190 - 4.A.6.1.4
TC HRGMv2_1552_9 HRGMv2_1552_9_21 21180 21980 - 4.A.6.1.4
TC HRGMv2_1552_9 HRGMv2_1552_9_22 22071 22553 - 4.A.6.1.4
pfam HRGMv2_1552_9 HRGMv2_1552_9_23 22590 22871 - YajC
TC HRGMv2_1552_9 HRGMv2_1552_9_24 22871 23314 - 4.A.6.1.16
Gene ID: HRGMv2_1552_9_17
Type: CAZyme
Location: 16622 - 17791 (-)
Gene ID: HRGMv2_1552_9_18
Type: STP
Location: 17911 - 19077 (-)
Gene ID: HRGMv2_1552_9_19
Type: TF
Location: 19192 - 19923 (-)
Gene ID: HRGMv2_1552_9_20
Type: TC
Location: 20108 - 21190 (-)
Gene ID: HRGMv2_1552_9_21
Type: TC
Location: 21180 - 21980 (-)
Gene ID: HRGMv2_1552_9_22
Type: TC
Location: 22071 - 22553 (-)
Gene ID: HRGMv2_1552_9_23
Type: pfam
Location: 22590 - 22871 (-)
Gene ID: HRGMv2_1552_9_24
Type: TC
Location: 22871 - 23314 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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