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Cluster: HRGMv2_1551_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1551_3 HRGMv2_1551_3_15 14155 14598 + 4.A.6.1.16
pfam HRGMv2_1551_3 HRGMv2_1551_3_16 14598 14879 + YajC
TC HRGMv2_1551_3 HRGMv2_1551_3_17 14916 15398 + 4.A.6.1.4
TC HRGMv2_1551_3 HRGMv2_1551_3_18 15489 16289 + 4.A.6.1.4
TC HRGMv2_1551_3 HRGMv2_1551_3_19 16279 17361 + 4.A.6.1.4
TF HRGMv2_1551_3 HRGMv2_1551_3_20 17547 18278 + GntR
STP HRGMv2_1551_3 HRGMv2_1551_3_21 18393 19559 + SIS | SIS
CAZyme HRGMv2_1551_3 HRGMv2_1551_3_22 19678 20847 + CE9
Gene ID: HRGMv2_1551_3_15
Type: TC
Location: 14155 - 14598 (+)
Gene ID: HRGMv2_1551_3_16
Type: pfam
Location: 14598 - 14879 (+)
Gene ID: HRGMv2_1551_3_17
Type: TC
Location: 14916 - 15398 (+)
Gene ID: HRGMv2_1551_3_18
Type: TC
Location: 15489 - 16289 (+)
Gene ID: HRGMv2_1551_3_19
Type: TC
Location: 16279 - 17361 (+)
Gene ID: HRGMv2_1551_3_20
Type: TF
Location: 17547 - 18278 (+)
Gene ID: HRGMv2_1551_3_21
Type: STP
Location: 18393 - 19559 (+)
Gene ID: HRGMv2_1551_3_22
Type: CAZyme
Location: 19678 - 20847 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1551_3_16 vegan > omnivore 1.00936 0.00863

🧭 Explore Read Mapping of CGC

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