Cluster: HRGMv2_1551_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1551
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1551_1 | HRGMv2_1551_1_12 | 13314 | 14768 | - | GH1 |
| NULL(UNKNOWN) | HRGMv2_1551_1 | HRGMv2_1551_1_13 | 14770 | 15051 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1551_1 | HRGMv2_1551_1_14 | 15048 | 16103 | - | 4.A.3.2.6 |
| TC | HRGMv2_1551_1 | HRGMv2_1551_1_15 | 16113 | 16406 | - | 4.A.3.2.6 |
| TC | HRGMv2_1551_1 | HRGMv2_1551_1_16 | 16453 | 16779 | - | 4.A.3.2.7 |
Gene ID: HRGMv2_1551_1_12
Type: CAZyme
Location: 13314 - 14768 (-)
Type: CAZyme
Location: 13314 - 14768 (-)
Gene ID: HRGMv2_1551_1_13
Type:
Location: 14770 - 15051 (-)
Type:
Location: 14770 - 15051 (-)
Gene ID: HRGMv2_1551_1_14
Type: TC
Location: 15048 - 16103 (-)
Type: TC
Location: 15048 - 16103 (-)
Gene ID: HRGMv2_1551_1_15
Type: TC
Location: 16113 - 16406 (-)
Type: TC
Location: 16113 - 16406 (-)
Gene ID: HRGMv2_1551_1_16
Type: TC
Location: 16453 - 16779 (-)
Type: TC
Location: 16453 - 16779 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1551_1_12 | vegetarian > vegan | 1.52449 | 0.02500 |
| HRGMv2_1551_1_13 | vegetarian > vegan | 2.00120 | 0.02500 |
| HRGMv2_1551_1_14 | vegetarian > vegan | 2.19864 | 0.02500 |
| HRGMv2_1551_1_15 | vegetarian > vegan | 2.39191 | 0.02500 |
| HRGMv2_1551_1_16 | vegetarian > vegan | 1.59626 | 0.02500 |