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Cluster: HRGMv2_1549_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1549_10 HRGMv2_1549_10_7 5422 7764 - 3.A.3.5.15
STP HRGMv2_1549_10 HRGMv2_1549_10_8 8097 10181 - Pkinase
STP HRGMv2_1549_10 HRGMv2_1549_10_9 10353 11315 - FHA
TC HRGMv2_1549_10 HRGMv2_1549_10_10 11915 14170 + 1.I.1.1.3
STP HRGMv2_1549_10 HRGMv2_1549_10_11 14792 15553 + Fer4
TC HRGMv2_1549_10 HRGMv2_1549_10_12 15834 16346 + 4.A.1.2.5
pfam HRGMv2_1549_10 HRGMv2_1549_10_13 16353 17219 + PRD | PRD | CAT_RBD
TC HRGMv2_1549_10 HRGMv2_1549_10_14 17319 18935 + 4.A.1.1.3
CAZyme HRGMv2_1549_10 HRGMv2_1549_10_15 18939 20321 + GH4
Gene ID: HRGMv2_1549_10_7
Type: TC
Location: 5422 - 7764 (-)
Gene ID: HRGMv2_1549_10_8
Type: STP
Location: 8097 - 10181 (-)
Gene ID: HRGMv2_1549_10_9
Type: STP
Location: 10353 - 11315 (-)
Gene ID: HRGMv2_1549_10_10
Type: TC
Location: 11915 - 14170 (+)
Gene ID: HRGMv2_1549_10_11
Type: STP
Location: 14792 - 15553 (+)
Gene ID: HRGMv2_1549_10_12
Type: TC
Location: 15834 - 16346 (+)
Gene ID: HRGMv2_1549_10_13
Type: pfam
Location: 16353 - 17219 (+)
Gene ID: HRGMv2_1549_10_14
Type: TC
Location: 17319 - 18935 (+)
Gene ID: HRGMv2_1549_10_15
Type: CAZyme
Location: 18939 - 20321 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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