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Cluster: HRGMv2_1548_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1548_2 HRGMv2_1548_2_82 88839 90260 - GH1
TC HRGMv2_1548_2 HRGMv2_1548_2_83 90337 92115 - 4.A.3.1.1
TF HRGMv2_1548_2 HRGMv2_1548_2_84 92390 93400 + LacI
TC HRGMv2_1548_2 HRGMv2_1548_2_85 93813 95573 - 4.A.3.1.1
CAZyme HRGMv2_1548_2 HRGMv2_1548_2_86 95750 97192 - GH1
TF HRGMv2_1548_2 HRGMv2_1548_2_87 97534 98571 + LacI
CAZyme HRGMv2_1548_2 HRGMv2_1548_2_88 98839 100278 - GH1
TC HRGMv2_1548_2 HRGMv2_1548_2_89 100475 102247 - 4.A.3.1.1
TF HRGMv2_1548_2 HRGMv2_1548_2_90 102604 103608 + LacI
TC HRGMv2_1548_2 HRGMv2_1548_2_91 103822 104160 + 4.A.3.1.2
Gene ID: HRGMv2_1548_2_82
Type: CAZyme
Location: 88839 - 90260 (-)
Gene ID: HRGMv2_1548_2_83
Type: TC
Location: 90337 - 92115 (-)
Gene ID: HRGMv2_1548_2_84
Type: TF
Location: 92390 - 93400 (+)
Gene ID: HRGMv2_1548_2_85
Type: TC
Location: 93813 - 95573 (-)
Gene ID: HRGMv2_1548_2_86
Type: CAZyme
Location: 95750 - 97192 (-)
Gene ID: HRGMv2_1548_2_87
Type: TF
Location: 97534 - 98571 (+)
Gene ID: HRGMv2_1548_2_88
Type: CAZyme
Location: 98839 - 100278 (-)
Gene ID: HRGMv2_1548_2_89
Type: TC
Location: 100475 - 102247 (-)
Gene ID: HRGMv2_1548_2_90
Type: TF
Location: 102604 - 103608 (+)
Gene ID: HRGMv2_1548_2_91
Type: TC
Location: 103822 - 104160 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1548_2_87 vegetarian > omnivore 1.07431 0.01105

🧭 Explore Read Mapping of CGC

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