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Cluster: HRGMv2_1548_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1548_22 HRGMv2_1548_22_14 14368 15873 + GH77
CAZyme HRGMv2_1548_22 HRGMv2_1548_22_15 16003 18270 + GT35
TC HRGMv2_1548_22 HRGMv2_1548_22_16 18726 19922 - 3.A.1.1.22
TC HRGMv2_1548_22 HRGMv2_1548_22_17 19991 20830 - 3.A.1.1.45
TC HRGMv2_1548_22 HRGMv2_1548_22_18 20830 21684 - 3.A.1.1.45
TC HRGMv2_1548_22 HRGMv2_1548_22_19 21772 23088 - 3.A.1.1.45
TF HRGMv2_1548_22 HRGMv2_1548_22_20 23395 24114 - GntR
NULL(UNKNOWN) HRGMv2_1548_22 HRGMv2_1548_22_21 24198 24317 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1548_22 HRGMv2_1548_22_22 24339 26789 + 4.A.1.1.8
Gene ID: HRGMv2_1548_22_14
Type: CAZyme
Location: 14368 - 15873 (+)
Gene ID: HRGMv2_1548_22_15
Type: CAZyme
Location: 16003 - 18270 (+)
Gene ID: HRGMv2_1548_22_16
Type: TC
Location: 18726 - 19922 (-)
Gene ID: HRGMv2_1548_22_17
Type: TC
Location: 19991 - 20830 (-)
Gene ID: HRGMv2_1548_22_18
Type: TC
Location: 20830 - 21684 (-)
Gene ID: HRGMv2_1548_22_19
Type: TC
Location: 21772 - 23088 (-)
Gene ID: HRGMv2_1548_22_20
Type: TF
Location: 23395 - 24114 (-)
Gene ID: HRGMv2_1548_22_21
Type:
Location: 24198 - 24317 (-)
Gene ID: HRGMv2_1548_22_22
Type: TC
Location: 24339 - 26789 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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