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Cluster: HRGMv2_1548_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1548_17 HRGMv2_1548_17_7 5474 6940 - 2.A.66.2.23
pfam HRGMv2_1548_17 HRGMv2_1548_17_8 7025 7972 - ATPgrasp_TupA
pfam HRGMv2_1548_17 HRGMv2_1548_17_9 8116 9204 - EpsG
CAZyme HRGMv2_1548_17 HRGMv2_1548_17_10 9201 10304 - GT4
pfam HRGMv2_1548_17 HRGMv2_1548_17_11 10301 11248 - C5-epim_C
CAZyme HRGMv2_1548_17 HRGMv2_1548_17_12 11248 12540 - GT4
pfam HRGMv2_1548_17 HRGMv2_1548_17_13 12546 13817 - UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_1548_17 HRGMv2_1548_17_14 13861 14778 - GT2
TC HRGMv2_1548_17 HRGMv2_1548_17_15 14782 15546 - 9.B.18.1.2
Gene ID: HRGMv2_1548_17_7
Type: TC
Location: 5474 - 6940 (-)
Gene ID: HRGMv2_1548_17_8
Type: pfam
Location: 7025 - 7972 (-)
Gene ID: HRGMv2_1548_17_9
Type: pfam
Location: 8116 - 9204 (-)
Gene ID: HRGMv2_1548_17_10
Type: CAZyme
Location: 9201 - 10304 (-)
Gene ID: HRGMv2_1548_17_11
Type: pfam
Location: 10301 - 11248 (-)
Gene ID: HRGMv2_1548_17_12
Type: CAZyme
Location: 11248 - 12540 (-)
Gene ID: HRGMv2_1548_17_13
Type: pfam
Location: 12546 - 13817 (-)
Gene ID: HRGMv2_1548_17_14
Type: CAZyme
Location: 13861 - 14778 (-)
Gene ID: HRGMv2_1548_17_15
Type: TC
Location: 14782 - 15546 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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