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Cluster: HRGMv2_1547_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1547_29 HRGMv2_1547_29_4 4995 6500 + GH77
CAZyme HRGMv2_1547_29 HRGMv2_1547_29_5 6630 8897 + GT35
TC HRGMv2_1547_29 HRGMv2_1547_29_6 9353 10552 - 3.A.1.1.22
TC HRGMv2_1547_29 HRGMv2_1547_29_7 10621 11460 - 3.A.1.1.45
TC HRGMv2_1547_29 HRGMv2_1547_29_8 11460 12314 - 3.A.1.1.45
TC HRGMv2_1547_29 HRGMv2_1547_29_9 12402 13718 - 3.A.1.1.45
TF HRGMv2_1547_29 HRGMv2_1547_29_10 14025 14744 - GntR
NULL(UNKNOWN) HRGMv2_1547_29 HRGMv2_1547_29_11 14828 14947 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1547_29 HRGMv2_1547_29_12 14969 17419 + 4.A.1.1.8
Gene ID: HRGMv2_1547_29_4
Type: CAZyme
Location: 4995 - 6500 (+)
Gene ID: HRGMv2_1547_29_5
Type: CAZyme
Location: 6630 - 8897 (+)
Gene ID: HRGMv2_1547_29_6
Type: TC
Location: 9353 - 10552 (-)
Gene ID: HRGMv2_1547_29_7
Type: TC
Location: 10621 - 11460 (-)
Gene ID: HRGMv2_1547_29_8
Type: TC
Location: 11460 - 12314 (-)
Gene ID: HRGMv2_1547_29_9
Type: TC
Location: 12402 - 13718 (-)
Gene ID: HRGMv2_1547_29_10
Type: TF
Location: 14025 - 14744 (-)
Gene ID: HRGMv2_1547_29_11
Type:
Location: 14828 - 14947 (-)
Gene ID: HRGMv2_1547_29_12
Type: TC
Location: 14969 - 17419 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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