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Cluster: HRGMv2_1547_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1547_14 HRGMv2_1547_14_35 40553 40891 - 4.A.3.1.2
TF HRGMv2_1547_14 HRGMv2_1547_14_36 41106 42110 - LacI
TC HRGMv2_1547_14 HRGMv2_1547_14_37 42468 44243 + 4.A.3.1.1
CAZyme HRGMv2_1547_14 HRGMv2_1547_14_38 44310 45749 + GH1
TF HRGMv2_1547_14 HRGMv2_1547_14_39 46011 47048 - LacI
CAZyme HRGMv2_1547_14 HRGMv2_1547_14_40 47390 48832 + GH1
TC HRGMv2_1547_14 HRGMv2_1547_14_41 49009 50769 + 4.A.3.1.1
TF HRGMv2_1547_14 HRGMv2_1547_14_42 51105 52115 - LacI
TC HRGMv2_1547_14 HRGMv2_1547_14_43 52391 54169 + 4.A.3.1.1
CAZyme HRGMv2_1547_14 HRGMv2_1547_14_44 54246 55667 + GH1
Gene ID: HRGMv2_1547_14_35
Type: TC
Location: 40553 - 40891 (-)
Gene ID: HRGMv2_1547_14_36
Type: TF
Location: 41106 - 42110 (-)
Gene ID: HRGMv2_1547_14_37
Type: TC
Location: 42468 - 44243 (+)
Gene ID: HRGMv2_1547_14_38
Type: CAZyme
Location: 44310 - 45749 (+)
Gene ID: HRGMv2_1547_14_39
Type: TF
Location: 46011 - 47048 (-)
Gene ID: HRGMv2_1547_14_40
Type: CAZyme
Location: 47390 - 48832 (+)
Gene ID: HRGMv2_1547_14_41
Type: TC
Location: 49009 - 50769 (+)
Gene ID: HRGMv2_1547_14_42
Type: TF
Location: 51105 - 52115 (-)
Gene ID: HRGMv2_1547_14_43
Type: TC
Location: 52391 - 54169 (+)
Gene ID: HRGMv2_1547_14_44
Type: CAZyme
Location: 54246 - 55667 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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