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Cluster: HRGMv2_1546_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1546_4 HRGMv2_1546_4_11 9872 11248 - 3.A.1.17.3
pfam HRGMv2_1546_4 HRGMv2_1546_4_12 11252 12310 - NMT1
TC HRGMv2_1546_4 HRGMv2_1546_4_13 12313 14124 - 3.D.1.5.1
STP HRGMv2_1546_4 HRGMv2_1546_4_14 14118 15950 - Pyr_redox_2
CAZyme HRGMv2_1546_4 HRGMv2_1546_4_15 16206 17588 - GH4
TC HRGMv2_1546_4 HRGMv2_1546_4_16 17592 19208 - 4.A.1.1.3
pfam HRGMv2_1546_4 HRGMv2_1546_4_17 19308 20174 - PRD | PRD | CAT_RBD
TC HRGMv2_1546_4 HRGMv2_1546_4_18 20181 20693 - 4.A.1.2.5
TC HRGMv2_1546_4 HRGMv2_1546_4_19 21142 23391 - 1.I.1.1.3
STP HRGMv2_1546_4 HRGMv2_1546_4_20 23991 24953 + FHA
STP HRGMv2_1546_4 HRGMv2_1546_4_21 25125 27209 + Pkinase
TC HRGMv2_1546_4 HRGMv2_1546_4_22 27462 29804 + 3.A.3.5.15
Gene ID: HRGMv2_1546_4_11
Type: TC
Location: 9872 - 11248 (-)
Gene ID: HRGMv2_1546_4_12
Type: pfam
Location: 11252 - 12310 (-)
Gene ID: HRGMv2_1546_4_13
Type: TC
Location: 12313 - 14124 (-)
Gene ID: HRGMv2_1546_4_14
Type: STP
Location: 14118 - 15950 (-)
Gene ID: HRGMv2_1546_4_15
Type: CAZyme
Location: 16206 - 17588 (-)
Gene ID: HRGMv2_1546_4_16
Type: TC
Location: 17592 - 19208 (-)
Gene ID: HRGMv2_1546_4_17
Type: pfam
Location: 19308 - 20174 (-)
Gene ID: HRGMv2_1546_4_18
Type: TC
Location: 20181 - 20693 (-)
Gene ID: HRGMv2_1546_4_19
Type: TC
Location: 21142 - 23391 (-)
Gene ID: HRGMv2_1546_4_20
Type: STP
Location: 23991 - 24953 (+)
Gene ID: HRGMv2_1546_4_21
Type: STP
Location: 25125 - 27209 (+)
Gene ID: HRGMv2_1546_4_22
Type: TC
Location: 27462 - 29804 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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