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Cluster: HRGMv2_1546_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1546_1 HRGMv2_1546_1_28 35547 37223 + 3.A.1.5.35
TC HRGMv2_1546_1 HRGMv2_1546_1_29 37380 38417 + 3.A.1.5.37
TC HRGMv2_1546_1 HRGMv2_1546_1_30 38432 39367 + 3.A.1.5.11
TC HRGMv2_1546_1 HRGMv2_1546_1_31 39370 40461 + 3.A.1.5.34
TC HRGMv2_1546_1 HRGMv2_1546_1_32 40462 41490 + 3.A.1.5.36
STP HRGMv2_1546_1 HRGMv2_1546_1_33 42236 44581 + GAF | SpoIIE
STP HRGMv2_1546_1 HRGMv2_1546_1_34 44660 45406 + STAS
CAZyme HRGMv2_1546_1 HRGMv2_1546_1_35 46562 48295 + GH13_30
Gene ID: HRGMv2_1546_1_28
Type: TC
Location: 35547 - 37223 (+)
Gene ID: HRGMv2_1546_1_29
Type: TC
Location: 37380 - 38417 (+)
Gene ID: HRGMv2_1546_1_30
Type: TC
Location: 38432 - 39367 (+)
Gene ID: HRGMv2_1546_1_31
Type: TC
Location: 39370 - 40461 (+)
Gene ID: HRGMv2_1546_1_32
Type: TC
Location: 40462 - 41490 (+)
Gene ID: HRGMv2_1546_1_33
Type: STP
Location: 42236 - 44581 (+)
Gene ID: HRGMv2_1546_1_34
Type: STP
Location: 44660 - 45406 (+)
Gene ID: HRGMv2_1546_1_35
Type: CAZyme
Location: 46562 - 48295 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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