Cluster: HRGMv2_1546_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1546
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1546_29 | HRGMv2_1546_29_12 | 15942 | 18950 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_1546_29 | HRGMv2_1546_29_13 | 18954 | 19409 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1546_29 | HRGMv2_1546_29_14 | 19563 | 21026 | + | 2.A.3.7.4 |
| STP | HRGMv2_1546_29 | HRGMv2_1546_29_15 | 21448 | 21696 | + | PTS-HPr |
| STP | HRGMv2_1546_29 | HRGMv2_1546_29_16 | 21885 | 22127 | + | FeoA |
| TC | HRGMv2_1546_29 | HRGMv2_1546_29_17 | 22164 | 22385 | + | 9.A.8.1.6 |
| TC | HRGMv2_1546_29 | HRGMv2_1546_29_18 | 22511 | 24838 | + | 9.A.8.1.6 |
Gene ID: HRGMv2_1546_29_12
Type: CAZyme
Location: 15942 - 18950 (+)
Type: CAZyme
Location: 15942 - 18950 (+)
Gene ID: HRGMv2_1546_29_13
Type:
Location: 18954 - 19409 (+)
Type:
Location: 18954 - 19409 (+)
Gene ID: HRGMv2_1546_29_14
Type: TC
Location: 19563 - 21026 (+)
Type: TC
Location: 19563 - 21026 (+)
Gene ID: HRGMv2_1546_29_15
Type: STP
Location: 21448 - 21696 (+)
Type: STP
Location: 21448 - 21696 (+)
Gene ID: HRGMv2_1546_29_16
Type: STP
Location: 21885 - 22127 (+)
Type: STP
Location: 21885 - 22127 (+)
Gene ID: HRGMv2_1546_29_17
Type: TC
Location: 22164 - 22385 (+)
Type: TC
Location: 22164 - 22385 (+)
Gene ID: HRGMv2_1546_29_18
Type: TC
Location: 22511 - 24838 (+)
Type: TC
Location: 22511 - 24838 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.