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Cluster: HRGMv2_1546_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1546_11 HRGMv2_1546_11_50 48620 49996 - GH13_20
TC HRGMv2_1546_11 HRGMv2_1546_11_51 50150 50839 - 2.A.1.2.18
TC HRGMv2_1546_11 HRGMv2_1546_11_52 50891 51346 - 2.A.1.2.15
TC HRGMv2_1546_11 HRGMv2_1546_11_53 51468 53828 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1546_11 HRGMv2_1546_11_54 53950 54270 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_1546_11 HRGMv2_1546_11_55 54318 55217 - S09.UPW
TC HRGMv2_1546_11 HRGMv2_1546_11_56 55462 56025 + 4.A.1.2.6
pfam HRGMv2_1546_11 HRGMv2_1546_11_57 56207 57610 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1546_11 HRGMv2_1546_11_58 57870 58655 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1546_11 HRGMv2_1546_11_59 58816 59364 + 3.A.1.34.1
Gene ID: HRGMv2_1546_11_50
Type: CAZyme
Location: 48620 - 49996 (-)
Gene ID: HRGMv2_1546_11_51
Type: TC
Location: 50150 - 50839 (-)
Gene ID: HRGMv2_1546_11_52
Type: TC
Location: 50891 - 51346 (-)
Gene ID: HRGMv2_1546_11_53
Type: TC
Location: 51468 - 53828 (-)
Gene ID: HRGMv2_1546_11_54
Type:
Location: 53950 - 54270 (-)
Gene ID: HRGMv2_1546_11_55
Type: peptidase
Location: 54318 - 55217 (-)
Gene ID: HRGMv2_1546_11_56
Type: TC
Location: 55462 - 56025 (+)
Gene ID: HRGMv2_1546_11_57
Type: pfam
Location: 56207 - 57610 (+)
Gene ID: HRGMv2_1546_11_58
Type:
Location: 57870 - 58655 (+)
Gene ID: HRGMv2_1546_11_59
Type: TC
Location: 58816 - 59364 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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