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Cluster: HRGMv2_1546_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1546_1 HRGMv2_1546_1_10 13583 15265 + 2.A.66.4.4
pfam HRGMv2_1546_1 HRGMv2_1546_1_11 15272 17212 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1546_1 HRGMv2_1546_1_12 17578 19191 + 3.A.1.5.27
TC HRGMv2_1546_1 HRGMv2_1546_1_13 19349 20305 + 3.A.1.5.38
TC HRGMv2_1546_1 HRGMv2_1546_1_14 20309 22324 + 3.A.1.5.25
TC HRGMv2_1546_1 HRGMv2_1546_1_15 22325 23152 + 3.A.1.5.27
CAZyme HRGMv2_1546_1 HRGMv2_1546_1_16 23326 24210 + CE7
Gene ID: HRGMv2_1546_1_10
Type: TC
Location: 13583 - 15265 (+)
Gene ID: HRGMv2_1546_1_11
Type: pfam
Location: 15272 - 17212 (+)
Gene ID: HRGMv2_1546_1_12
Type: TC
Location: 17578 - 19191 (+)
Gene ID: HRGMv2_1546_1_13
Type: TC
Location: 19349 - 20305 (+)
Gene ID: HRGMv2_1546_1_14
Type: TC
Location: 20309 - 22324 (+)
Gene ID: HRGMv2_1546_1_15
Type: TC
Location: 22325 - 23152 (+)
Gene ID: HRGMv2_1546_1_16
Type: CAZyme
Location: 23326 - 24210 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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