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Cluster: HRGMv2_1545_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1545_11 HRGMv2_1545_11_44 41320 43011 + 4.A.3.1.1
CAZyme HRGMv2_1545_11 HRGMv2_1545_11_45 43924 45345 - GH1
TC HRGMv2_1545_11 HRGMv2_1545_11_46 45422 47179 - 4.A.3.1.1
TF HRGMv2_1545_11 HRGMv2_1545_11_47 47455 48465 + LacI
CAZyme HRGMv2_1545_11 HRGMv2_1545_11_48 48994 50433 - GH1
TC HRGMv2_1545_11 HRGMv2_1545_11_49 50500 52272 - 4.A.3.1.1
TF HRGMv2_1545_11 HRGMv2_1545_11_50 52629 53633 + LacI
TC HRGMv2_1545_11 HRGMv2_1545_11_51 53847 54185 + 4.A.3.1.2
Gene ID: HRGMv2_1545_11_44
Type: TC
Location: 41320 - 43011 (+)
Gene ID: HRGMv2_1545_11_45
Type: CAZyme
Location: 43924 - 45345 (-)
Gene ID: HRGMv2_1545_11_46
Type: TC
Location: 45422 - 47179 (-)
Gene ID: HRGMv2_1545_11_47
Type: TF
Location: 47455 - 48465 (+)
Gene ID: HRGMv2_1545_11_48
Type: CAZyme
Location: 48994 - 50433 (-)
Gene ID: HRGMv2_1545_11_49
Type: TC
Location: 50500 - 52272 (-)
Gene ID: HRGMv2_1545_11_50
Type: TF
Location: 52629 - 53633 (+)
Gene ID: HRGMv2_1545_11_51
Type: TC
Location: 53847 - 54185 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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