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Cluster: HRGMv2_1545_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1545_11 HRGMv2_1545_11_23 23488 23931 + 4.A.6.1.16
pfam HRGMv2_1545_11 HRGMv2_1545_11_24 23931 24212 + YajC
TC HRGMv2_1545_11 HRGMv2_1545_11_25 24249 24731 + 4.A.6.1.4
TC HRGMv2_1545_11 HRGMv2_1545_11_26 24822 25622 + 4.A.6.1.4
TC HRGMv2_1545_11 HRGMv2_1545_11_27 25612 26694 + 4.A.6.1.4
TF HRGMv2_1545_11 HRGMv2_1545_11_28 26879 27610 + GntR
STP HRGMv2_1545_11 HRGMv2_1545_11_29 27725 28891 + SIS | SIS
CAZyme HRGMv2_1545_11 HRGMv2_1545_11_30 29009 30178 + CE9
Gene ID: HRGMv2_1545_11_23
Type: TC
Location: 23488 - 23931 (+)
Gene ID: HRGMv2_1545_11_24
Type: pfam
Location: 23931 - 24212 (+)
Gene ID: HRGMv2_1545_11_25
Type: TC
Location: 24249 - 24731 (+)
Gene ID: HRGMv2_1545_11_26
Type: TC
Location: 24822 - 25622 (+)
Gene ID: HRGMv2_1545_11_27
Type: TC
Location: 25612 - 26694 (+)
Gene ID: HRGMv2_1545_11_28
Type: TF
Location: 26879 - 27610 (+)
Gene ID: HRGMv2_1545_11_29
Type: STP
Location: 27725 - 28891 (+)
Gene ID: HRGMv2_1545_11_30
Type: CAZyme
Location: 29009 - 30178 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1545_11_24 vegan > omnivore 1.11592 0.00566

🧭 Explore Read Mapping of CGC

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