Cluster: HRGMv2_1545_CGC1
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1545
- CGC Family ID: CGCFAM_00024
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1545_1 | HRGMv2_1545_1_68 | 74035 | 74802 | - | 1.A.23.4.10 |
| pfam | HRGMv2_1545_1 | HRGMv2_1545_1_69 | 74932 | 76950 | - | Metallophos | 5_nucleotid_C |
| TC | HRGMv2_1545_1 | HRGMv2_1545_1_70 | 77024 | 77818 | - | 3.A.1.34.1 |
| TC | HRGMv2_1545_1 | HRGMv2_1545_1_71 | 77811 | 78734 | - | 3.A.1.34.1 |
| TC | HRGMv2_1545_1 | HRGMv2_1545_1_72 | 78939 | 79919 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | HRGMv2_1545_1 | HRGMv2_1545_1_73 | 80079 | 80867 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1545_1 | HRGMv2_1545_1_74 | 81129 | 82532 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | HRGMv2_1545_1 | HRGMv2_1545_1_75 | 82713 | 83276 | - | 4.A.1.2.6 |
| peptidase | HRGMv2_1545_1 | HRGMv2_1545_1_76 | 83522 | 84424 | + | S09.UPW |
| TC | HRGMv2_1545_1 | HRGMv2_1545_1_77 | 84943 | 87303 | + | 9.A.8.1.6 |
| TC | HRGMv2_1545_1 | HRGMv2_1545_1_78 | 87618 | 89282 | + | 4.A.1.1.3 |
| TF | HRGMv2_1545_1 | HRGMv2_1545_1_79 | 89345 | 90097 | - | HTH_6 |
| CAZyme | HRGMv2_1545_1 | HRGMv2_1545_1_80 | 90272 | 91645 | + | GH4 |
| NULL(UNKNOWN) | HRGMv2_1545_1 | HRGMv2_1545_1_81 | 91811 | 92563 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1545_1 | HRGMv2_1545_1_82 | 92739 | 93935 | + | 2.A.1.2.18 |
| CAZyme | HRGMv2_1545_1 | HRGMv2_1545_1_83 | 94402 | 95778 | + | GH13_20 |
Gene ID: HRGMv2_1545_1_68
Type: TC
Location: 74035 - 74802 (-)
Type: TC
Location: 74035 - 74802 (-)
Gene ID: HRGMv2_1545_1_69
Type: pfam
Location: 74932 - 76950 (-)
Type: pfam
Location: 74932 - 76950 (-)
Gene ID: HRGMv2_1545_1_70
Type: TC
Location: 77024 - 77818 (-)
Type: TC
Location: 77024 - 77818 (-)
Gene ID: HRGMv2_1545_1_71
Type: TC
Location: 77811 - 78734 (-)
Type: TC
Location: 77811 - 78734 (-)
Gene ID: HRGMv2_1545_1_72
Type: TC
Location: 78939 - 79919 (-)
Type: TC
Location: 78939 - 79919 (-)
Gene ID: HRGMv2_1545_1_73
Type:
Location: 80079 - 80867 (-)
Type:
Location: 80079 - 80867 (-)
Gene ID: HRGMv2_1545_1_74
Type: pfam
Location: 81129 - 82532 (-)
Type: pfam
Location: 81129 - 82532 (-)
Gene ID: HRGMv2_1545_1_75
Type: TC
Location: 82713 - 83276 (-)
Type: TC
Location: 82713 - 83276 (-)
Gene ID: HRGMv2_1545_1_76
Type: peptidase
Location: 83522 - 84424 (+)
Type: peptidase
Location: 83522 - 84424 (+)
Gene ID: HRGMv2_1545_1_77
Type: TC
Location: 84943 - 87303 (+)
Type: TC
Location: 84943 - 87303 (+)
Gene ID: HRGMv2_1545_1_78
Type: TC
Location: 87618 - 89282 (+)
Type: TC
Location: 87618 - 89282 (+)
Gene ID: HRGMv2_1545_1_79
Type: TF
Location: 89345 - 90097 (-)
Type: TF
Location: 89345 - 90097 (-)
Gene ID: HRGMv2_1545_1_80
Type: CAZyme
Location: 90272 - 91645 (+)
Type: CAZyme
Location: 90272 - 91645 (+)
Gene ID: HRGMv2_1545_1_81
Type:
Location: 91811 - 92563 (+)
Type:
Location: 91811 - 92563 (+)
Gene ID: HRGMv2_1545_1_82
Type: TC
Location: 92739 - 93935 (+)
Type: TC
Location: 92739 - 93935 (+)
Gene ID: HRGMv2_1545_1_83
Type: CAZyme
Location: 94402 - 95778 (+)
Type: CAZyme
Location: 94402 - 95778 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1545_1_69 | vegan > omnivore | 1.94005 | 0.00566 |
| HRGMv2_1545_1_69 | vegetarian > omnivore | 1.43596 | 0.01882 |
| HRGMv2_1545_1_80 | vegan > omnivore | 1.41631 | 0.00566 |
| HRGMv2_1545_1_81 | vegan > omnivore | 1.73834 | 0.00566 |