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Cluster: HRGMv2_1544_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1544_16 HRGMv2_1544_16_7 5599 6768 - CE9
STP HRGMv2_1544_16 HRGMv2_1544_16_8 6886 8052 - SIS | SIS
TF HRGMv2_1544_16 HRGMv2_1544_16_9 8167 8898 - GntR
TC HRGMv2_1544_16 HRGMv2_1544_16_10 9084 10166 - 4.A.6.1.4
TC HRGMv2_1544_16 HRGMv2_1544_16_11 10156 10956 - 4.A.6.1.4
TC HRGMv2_1544_16 HRGMv2_1544_16_12 11047 11529 - 4.A.6.1.4
pfam HRGMv2_1544_16 HRGMv2_1544_16_13 11566 11847 - YajC
TC HRGMv2_1544_16 HRGMv2_1544_16_14 11847 12290 - 4.A.6.1.16
Gene ID: HRGMv2_1544_16_7
Type: CAZyme
Location: 5599 - 6768 (-)
Gene ID: HRGMv2_1544_16_8
Type: STP
Location: 6886 - 8052 (-)
Gene ID: HRGMv2_1544_16_9
Type: TF
Location: 8167 - 8898 (-)
Gene ID: HRGMv2_1544_16_10
Type: TC
Location: 9084 - 10166 (-)
Gene ID: HRGMv2_1544_16_11
Type: TC
Location: 10156 - 10956 (-)
Gene ID: HRGMv2_1544_16_12
Type: TC
Location: 11047 - 11529 (-)
Gene ID: HRGMv2_1544_16_13
Type: pfam
Location: 11566 - 11847 (-)
Gene ID: HRGMv2_1544_16_14
Type: TC
Location: 11847 - 12290 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1544_16_13 vegan > omnivore 1.17911 0.00455
HRGMv2_1544_16_14 vegan > omnivore 1.01457 0.00455

🧭 Explore Read Mapping of CGC

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