dbCAN Logo

Cluster: HRGMv2_1544_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1544_13 HRGMv2_1544_13_11 15527 16903 - GH13_20
TC HRGMv2_1544_13 HRGMv2_1544_13_12 17057 18253 - 2.A.1.2.18
TC HRGMv2_1544_13 HRGMv2_1544_13_13 18377 20737 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1544_13 HRGMv2_1544_13_14 20859 21179 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_1544_13 HRGMv2_1544_13_15 21227 22126 - S09.UPW
TC HRGMv2_1544_13 HRGMv2_1544_13_16 22295 22936 + 4.A.1.2.6
TC HRGMv2_1544_13 HRGMv2_1544_13_17 23172 25106 + 9.B.97.5.1
Gene ID: HRGMv2_1544_13_11
Type: CAZyme
Location: 15527 - 16903 (-)
Gene ID: HRGMv2_1544_13_12
Type: TC
Location: 17057 - 18253 (-)
Gene ID: HRGMv2_1544_13_13
Type: TC
Location: 18377 - 20737 (-)
Gene ID: HRGMv2_1544_13_14
Type:
Location: 20859 - 21179 (-)
Gene ID: HRGMv2_1544_13_15
Type: peptidase
Location: 21227 - 22126 (-)
Gene ID: HRGMv2_1544_13_16
Type: TC
Location: 22295 - 22936 (+)
Gene ID: HRGMv2_1544_13_17
Type: TC
Location: 23172 - 25106 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1544_13_17 vegan > omnivore 1.35736 0.00455
HRGMv2_1544_13_17 vegetarian > omnivore 1.52387 0.02695

🧭 Explore Read Mapping of CGC

← Back to Cluster List