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Cluster: HRGMv2_1544_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1544_8 HRGMv2_1544_8_15 14594 15478 - CE7
TC HRGMv2_1544_8 HRGMv2_1544_8_16 15652 16479 - 3.A.1.5.27
TC HRGMv2_1544_8 HRGMv2_1544_8_17 16480 18495 - 3.A.1.5.25
TC HRGMv2_1544_8 HRGMv2_1544_8_18 18499 19455 - 3.A.1.5.38
TC HRGMv2_1544_8 HRGMv2_1544_8_19 19613 21226 - 3.A.1.5.27
pfam HRGMv2_1544_8 HRGMv2_1544_8_20 21592 23532 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1544_8 HRGMv2_1544_8_21 23539 25221 - 2.A.66.4.4
pfam HRGMv2_1544_8 HRGMv2_1544_8_22 25225 28737 - tRNA_edit | UvrA_DNA-bind | UvrA_inter
pfam HRGMv2_1544_8 HRGMv2_1544_8_23 28931 31084 + Sulfatase
TC HRGMv2_1544_8 HRGMv2_1544_8_24 31230 32060 + 3.A.1.132.3
Gene ID: HRGMv2_1544_8_15
Type: CAZyme
Location: 14594 - 15478 (-)
Gene ID: HRGMv2_1544_8_16
Type: TC
Location: 15652 - 16479 (-)
Gene ID: HRGMv2_1544_8_17
Type: TC
Location: 16480 - 18495 (-)
Gene ID: HRGMv2_1544_8_18
Type: TC
Location: 18499 - 19455 (-)
Gene ID: HRGMv2_1544_8_19
Type: TC
Location: 19613 - 21226 (-)
Gene ID: HRGMv2_1544_8_20
Type: pfam
Location: 21592 - 23532 (-)
Gene ID: HRGMv2_1544_8_21
Type: TC
Location: 23539 - 25221 (-)
Gene ID: HRGMv2_1544_8_22
Type: pfam
Location: 25225 - 28737 (-)
Gene ID: HRGMv2_1544_8_23
Type: pfam
Location: 28931 - 31084 (+)
Gene ID: HRGMv2_1544_8_24
Type: TC
Location: 31230 - 32060 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1544_8_23 vegan > omnivore 1.12742 0.00455

🧭 Explore Read Mapping of CGC

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