Cluster: HRGMv2_1544_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1544
- CGC Family ID: CGCFAM_00413
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1544_57 | HRGMv2_1544_57_2 | 1440 | 2861 | + | 4.A.1.2.3 |
| pfam | HRGMv2_1544_57 | HRGMv2_1544_57_3 | 3148 | 4659 | - | Sde182_NH-like |
| peptidase | HRGMv2_1544_57 | HRGMv2_1544_57_4 | 4922 | 6259 | - | S09.UPW |
| TC | HRGMv2_1544_57 | HRGMv2_1544_57_5 | 6750 | 7784 | + | 4.A.1.2.6 |
| NULL(UNKNOWN) | HRGMv2_1544_57 | HRGMv2_1544_57_6 | 7788 | 8177 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1544_57 | HRGMv2_1544_57_7 | 8386 | 9699 | + | GH140 |
| TC | HRGMv2_1544_57 | HRGMv2_1544_57_8 | 9889 | 12657 | - | 3.A.3.4.1 |
Gene ID: HRGMv2_1544_57_2
Type: TC
Location: 1440 - 2861 (+)
Type: TC
Location: 1440 - 2861 (+)
Gene ID: HRGMv2_1544_57_3
Type: pfam
Location: 3148 - 4659 (-)
Type: pfam
Location: 3148 - 4659 (-)
Gene ID: HRGMv2_1544_57_4
Type: peptidase
Location: 4922 - 6259 (-)
Type: peptidase
Location: 4922 - 6259 (-)
Gene ID: HRGMv2_1544_57_5
Type: TC
Location: 6750 - 7784 (+)
Type: TC
Location: 6750 - 7784 (+)
Gene ID: HRGMv2_1544_57_6
Type:
Location: 7788 - 8177 (+)
Type:
Location: 7788 - 8177 (+)
Gene ID: HRGMv2_1544_57_7
Type: CAZyme
Location: 8386 - 9699 (+)
Type: CAZyme
Location: 8386 - 9699 (+)
Gene ID: HRGMv2_1544_57_8
Type: TC
Location: 9889 - 12657 (-)
Type: TC
Location: 9889 - 12657 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.