Cluster: HRGMv2_1544_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1544
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1544_1 | HRGMv2_1544_1_28 | 35474 | 38482 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_1544_1 | HRGMv2_1544_1_29 | 38486 | 38941 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1544_1 | HRGMv2_1544_1_30 | 39095 | 40558 | + | 2.A.3.7.4 |
| STP | HRGMv2_1544_1 | HRGMv2_1544_1_31 | 40979 | 41227 | + | PTS-HPr |
| STP | HRGMv2_1544_1 | HRGMv2_1544_1_32 | 41420 | 41662 | + | FeoA |
| TC | HRGMv2_1544_1 | HRGMv2_1544_1_33 | 41702 | 41923 | + | 9.A.8.1.6 |
| TC | HRGMv2_1544_1 | HRGMv2_1544_1_34 | 42047 | 44377 | + | 9.A.8.1.6 |
Gene ID: HRGMv2_1544_1_28
Type: CAZyme
Location: 35474 - 38482 (+)
Type: CAZyme
Location: 35474 - 38482 (+)
Gene ID: HRGMv2_1544_1_29
Type:
Location: 38486 - 38941 (+)
Type:
Location: 38486 - 38941 (+)
Gene ID: HRGMv2_1544_1_30
Type: TC
Location: 39095 - 40558 (+)
Type: TC
Location: 39095 - 40558 (+)
Gene ID: HRGMv2_1544_1_31
Type: STP
Location: 40979 - 41227 (+)
Type: STP
Location: 40979 - 41227 (+)
Gene ID: HRGMv2_1544_1_32
Type: STP
Location: 41420 - 41662 (+)
Type: STP
Location: 41420 - 41662 (+)
Gene ID: HRGMv2_1544_1_33
Type: TC
Location: 41702 - 41923 (+)
Type: TC
Location: 41702 - 41923 (+)
Gene ID: HRGMv2_1544_1_34
Type: TC
Location: 42047 - 44377 (+)
Type: TC
Location: 42047 - 44377 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.