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Cluster: HRGMv2_1542_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1542_20 HRGMv2_1542_20_4 3922 4716 - 3.A.1.34.1
TC HRGMv2_1542_20 HRGMv2_1542_20_5 4709 5632 - 3.A.1.34.1
TC HRGMv2_1542_20 HRGMv2_1542_20_6 5837 6817 - 3.A.1.34.1
pfam HRGMv2_1542_20 HRGMv2_1542_20_7 6977 7765 - WYL
pfam HRGMv2_1542_20 HRGMv2_1542_20_8 8023 9426 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1542_20 HRGMv2_1542_20_9 9563 11497 - 9.B.97.5.1
TC HRGMv2_1542_20 HRGMv2_1542_20_10 11732 12295 - 4.A.1.2.6
peptidase HRGMv2_1542_20 HRGMv2_1542_20_11 12542 13441 + S09.UPW
NULL(UNKNOWN) HRGMv2_1542_20 HRGMv2_1542_20_12 13489 13809 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1542_20 HRGMv2_1542_20_13 13931 16291 + 9.A.8.1.6
TC HRGMv2_1542_20 HRGMv2_1542_20_14 16415 17611 + 2.A.1.2.18
CAZyme HRGMv2_1542_20 HRGMv2_1542_20_15 17765 19141 + GH13_20
Gene ID: HRGMv2_1542_20_4
Type: TC
Location: 3922 - 4716 (-)
Gene ID: HRGMv2_1542_20_5
Type: TC
Location: 4709 - 5632 (-)
Gene ID: HRGMv2_1542_20_6
Type: TC
Location: 5837 - 6817 (-)
Gene ID: HRGMv2_1542_20_7
Type: pfam
Location: 6977 - 7765 (-)
Gene ID: HRGMv2_1542_20_8
Type: pfam
Location: 8023 - 9426 (-)
Gene ID: HRGMv2_1542_20_9
Type: TC
Location: 9563 - 11497 (-)
Gene ID: HRGMv2_1542_20_10
Type: TC
Location: 11732 - 12295 (-)
Gene ID: HRGMv2_1542_20_11
Type: peptidase
Location: 12542 - 13441 (+)
Gene ID: HRGMv2_1542_20_12
Type:
Location: 13489 - 13809 (+)
Gene ID: HRGMv2_1542_20_13
Type: TC
Location: 13931 - 16291 (+)
Gene ID: HRGMv2_1542_20_14
Type: TC
Location: 16415 - 17611 (+)
Gene ID: HRGMv2_1542_20_15
Type: CAZyme
Location: 17765 - 19141 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1542_20_9 vegan > omnivore 1.14013 0.01057
HRGMv2_1542_20_9 vegetarian > omnivore 1.29282 0.04576

🧭 Explore Read Mapping of CGC

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