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Cluster: HRGMv2_1542_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1542_12 HRGMv2_1542_12_16 15769 16695 - CE7
TC HRGMv2_1542_12 HRGMv2_1542_12_17 16827 17654 - 3.A.1.5.27
TC HRGMv2_1542_12 HRGMv2_1542_12_18 17655 19670 - 3.A.1.5.25
TC HRGMv2_1542_12 HRGMv2_1542_12_19 19674 20630 - 3.A.1.5.38
TC HRGMv2_1542_12 HRGMv2_1542_12_20 20788 22401 - 3.A.1.5.27
pfam HRGMv2_1542_12 HRGMv2_1542_12_21 22766 24706 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1542_12 HRGMv2_1542_12_22 24713 26395 - 2.A.66.4.4
Gene ID: HRGMv2_1542_12_16
Type: CAZyme
Location: 15769 - 16695 (-)
Gene ID: HRGMv2_1542_12_17
Type: TC
Location: 16827 - 17654 (-)
Gene ID: HRGMv2_1542_12_18
Type: TC
Location: 17655 - 19670 (-)
Gene ID: HRGMv2_1542_12_19
Type: TC
Location: 19674 - 20630 (-)
Gene ID: HRGMv2_1542_12_20
Type: TC
Location: 20788 - 22401 (-)
Gene ID: HRGMv2_1542_12_21
Type: pfam
Location: 22766 - 24706 (-)
Gene ID: HRGMv2_1542_12_22
Type: TC
Location: 24713 - 26395 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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