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Cluster: HRGMv2_1542_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1542_52 HRGMv2_1542_52_8 5623 6792 - CE9
STP HRGMv2_1542_52 HRGMv2_1542_52_9 6911 8077 - SIS | SIS
TF HRGMv2_1542_52 HRGMv2_1542_52_10 8192 8923 - GntR
TC HRGMv2_1542_52 HRGMv2_1542_52_11 9108 10190 - 4.A.6.1.4
TC HRGMv2_1542_52 HRGMv2_1542_52_12 10180 10980 - 4.A.6.1.4
TC HRGMv2_1542_52 HRGMv2_1542_52_13 11071 11553 - 4.A.6.1.4
pfam HRGMv2_1542_52 HRGMv2_1542_52_14 11590 11871 - YajC
TC HRGMv2_1542_52 HRGMv2_1542_52_15 11871 12314 - 4.A.6.1.16
Gene ID: HRGMv2_1542_52_8
Type: CAZyme
Location: 5623 - 6792 (-)
Gene ID: HRGMv2_1542_52_9
Type: STP
Location: 6911 - 8077 (-)
Gene ID: HRGMv2_1542_52_10
Type: TF
Location: 8192 - 8923 (-)
Gene ID: HRGMv2_1542_52_11
Type: TC
Location: 9108 - 10190 (-)
Gene ID: HRGMv2_1542_52_12
Type: TC
Location: 10180 - 10980 (-)
Gene ID: HRGMv2_1542_52_13
Type: TC
Location: 11071 - 11553 (-)
Gene ID: HRGMv2_1542_52_14
Type: pfam
Location: 11590 - 11871 (-)
Gene ID: HRGMv2_1542_52_15
Type: TC
Location: 11871 - 12314 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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