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Cluster: HRGMv2_1542_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1542_40 HRGMv2_1542_40_6 5471 6892 - GH1
TC HRGMv2_1542_40 HRGMv2_1542_40_7 6968 8746 - 4.A.3.1.1
TF HRGMv2_1542_40 HRGMv2_1542_40_8 9023 10033 + LacI
CAZyme HRGMv2_1542_40 HRGMv2_1542_40_9 10386 11825 - GH1
TC HRGMv2_1542_40 HRGMv2_1542_40_10 11892 13658 - 4.A.3.1.1
TF HRGMv2_1542_40 HRGMv2_1542_40_11 14014 15018 + LacI
TC HRGMv2_1542_40 HRGMv2_1542_40_12 15233 15571 + 4.A.3.1.2
Gene ID: HRGMv2_1542_40_6
Type: CAZyme
Location: 5471 - 6892 (-)
Gene ID: HRGMv2_1542_40_7
Type: TC
Location: 6968 - 8746 (-)
Gene ID: HRGMv2_1542_40_8
Type: TF
Location: 9023 - 10033 (+)
Gene ID: HRGMv2_1542_40_9
Type: CAZyme
Location: 10386 - 11825 (-)
Gene ID: HRGMv2_1542_40_10
Type: TC
Location: 11892 - 13658 (-)
Gene ID: HRGMv2_1542_40_11
Type: TF
Location: 14014 - 15018 (+)
Gene ID: HRGMv2_1542_40_12
Type: TC
Location: 15233 - 15571 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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