Cluster: HRGMv2_1542_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1542
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1542_3 | HRGMv2_1542_3_41 | 53773 | 56100 | - | 9.A.8.1.6 |
| TC | HRGMv2_1542_3 | HRGMv2_1542_3_42 | 56224 | 56445 | - | 9.A.8.1.6 |
| STP | HRGMv2_1542_3 | HRGMv2_1542_3_43 | 56483 | 56725 | - | FeoA |
| STP | HRGMv2_1542_3 | HRGMv2_1542_3_44 | 56914 | 57162 | - | PTS-HPr |
| TC | HRGMv2_1542_3 | HRGMv2_1542_3_45 | 57584 | 59047 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | HRGMv2_1542_3 | HRGMv2_1542_3_46 | 59201 | 59656 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1542_3 | HRGMv2_1542_3_47 | 59660 | 62668 | - | GH2 |
Gene ID: HRGMv2_1542_3_41
Type: TC
Location: 53773 - 56100 (-)
Type: TC
Location: 53773 - 56100 (-)
Gene ID: HRGMv2_1542_3_42
Type: TC
Location: 56224 - 56445 (-)
Type: TC
Location: 56224 - 56445 (-)
Gene ID: HRGMv2_1542_3_43
Type: STP
Location: 56483 - 56725 (-)
Type: STP
Location: 56483 - 56725 (-)
Gene ID: HRGMv2_1542_3_44
Type: STP
Location: 56914 - 57162 (-)
Type: STP
Location: 56914 - 57162 (-)
Gene ID: HRGMv2_1542_3_45
Type: TC
Location: 57584 - 59047 (-)
Type: TC
Location: 57584 - 59047 (-)
Gene ID: HRGMv2_1542_3_46
Type:
Location: 59201 - 59656 (-)
Type:
Location: 59201 - 59656 (-)
Gene ID: HRGMv2_1542_3_47
Type: CAZyme
Location: 59660 - 62668 (-)
Type: CAZyme
Location: 59660 - 62668 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019041915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.