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Cluster: HRGMv2_1541_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1541_21 HRGMv2_1541_21_7 4214 5383 - CE9
STP HRGMv2_1541_21 HRGMv2_1541_21_8 5501 6667 - SIS | SIS
TF HRGMv2_1541_21 HRGMv2_1541_21_9 6782 7513 - GntR
TC HRGMv2_1541_21 HRGMv2_1541_21_10 7698 8780 - 4.A.6.1.4
TC HRGMv2_1541_21 HRGMv2_1541_21_11 8770 9570 - 4.A.6.1.4
TC HRGMv2_1541_21 HRGMv2_1541_21_12 9661 10143 - 4.A.6.1.4
pfam HRGMv2_1541_21 HRGMv2_1541_21_13 10180 10461 - YajC
TC HRGMv2_1541_21 HRGMv2_1541_21_14 10461 10904 - 4.A.6.1.16
Gene ID: HRGMv2_1541_21_7
Type: CAZyme
Location: 4214 - 5383 (-)
Gene ID: HRGMv2_1541_21_8
Type: STP
Location: 5501 - 6667 (-)
Gene ID: HRGMv2_1541_21_9
Type: TF
Location: 6782 - 7513 (-)
Gene ID: HRGMv2_1541_21_10
Type: TC
Location: 7698 - 8780 (-)
Gene ID: HRGMv2_1541_21_11
Type: TC
Location: 8770 - 9570 (-)
Gene ID: HRGMv2_1541_21_12
Type: TC
Location: 9661 - 10143 (-)
Gene ID: HRGMv2_1541_21_13
Type: pfam
Location: 10180 - 10461 (-)
Gene ID: HRGMv2_1541_21_14
Type: TC
Location: 10461 - 10904 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1541_21_13 vegan > omnivore 1.11100 0.00701

🧭 Explore Read Mapping of CGC

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