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Cluster: HRGMv2_1540_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1540_12 HRGMv2_1540_12_4 2766 5216 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_1540_12 HRGMv2_1540_12_5 5238 5357 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1540_12 HRGMv2_1540_12_6 5441 6160 + GntR
TC HRGMv2_1540_12 HRGMv2_1540_12_7 6467 7783 + 3.A.1.1.45
TC HRGMv2_1540_12 HRGMv2_1540_12_8 7871 8725 + 3.A.1.1.45
TC HRGMv2_1540_12 HRGMv2_1540_12_9 8725 9564 + 3.A.1.1.45
TC HRGMv2_1540_12 HRGMv2_1540_12_10 9633 10832 + 3.A.1.1.22
CAZyme HRGMv2_1540_12 HRGMv2_1540_12_11 11288 13555 - GT35
CAZyme HRGMv2_1540_12 HRGMv2_1540_12_12 13685 15190 - GH77
Gene ID: HRGMv2_1540_12_4
Type: TC
Location: 2766 - 5216 (-)
Gene ID: HRGMv2_1540_12_5
Type:
Location: 5238 - 5357 (+)
Gene ID: HRGMv2_1540_12_6
Type: TF
Location: 5441 - 6160 (+)
Gene ID: HRGMv2_1540_12_7
Type: TC
Location: 6467 - 7783 (+)
Gene ID: HRGMv2_1540_12_8
Type: TC
Location: 7871 - 8725 (+)
Gene ID: HRGMv2_1540_12_9
Type: TC
Location: 8725 - 9564 (+)
Gene ID: HRGMv2_1540_12_10
Type: TC
Location: 9633 - 10832 (+)
Gene ID: HRGMv2_1540_12_11
Type: CAZyme
Location: 11288 - 13555 (-)
Gene ID: HRGMv2_1540_12_12
Type: CAZyme
Location: 13685 - 15190 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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