Cluster: HRGMv2_1540_CGC5
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1540
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1540_8 | HRGMv2_1540_8_6 | 3001 | 3708 | + | 1.C.82.1.1 |
| pfam | HRGMv2_1540_8 | HRGMv2_1540_8_7 | 3836 | 4546 | - | Metallophos | Metallophos_2 |
| pfam | HRGMv2_1540_8 | HRGMv2_1540_8_8 | 4543 | 6459 | - | Bmp |
| TC | HRGMv2_1540_8 | HRGMv2_1540_8_9 | 6553 | 7320 | - | 1.A.23.4.2 |
| pfam | HRGMv2_1540_8 | HRGMv2_1540_8_10 | 7449 | 9476 | - | Metallophos | 5_nucleotid_C |
| TC | HRGMv2_1540_8 | HRGMv2_1540_8_11 | 9634 | 10428 | - | 3.A.1.34.1 |
| TC | HRGMv2_1540_8 | HRGMv2_1540_8_12 | 10421 | 11344 | - | 3.A.1.34.1 |
| TC | HRGMv2_1540_8 | HRGMv2_1540_8_13 | 11549 | 12529 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | HRGMv2_1540_8 | HRGMv2_1540_8_14 | 12690 | 13475 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1540_8 | HRGMv2_1540_8_15 | 13724 | 15127 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | HRGMv2_1540_8 | HRGMv2_1540_8_16 | 15309 | 15872 | - | 4.A.1.2.6 |
| peptidase | HRGMv2_1540_8 | HRGMv2_1540_8_17 | 16117 | 17016 | + | S09.UPW |
| NULL(UNKNOWN) | HRGMv2_1540_8 | HRGMv2_1540_8_18 | 17064 | 17384 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1540_8 | HRGMv2_1540_8_19 | 17506 | 19866 | + | 9.A.8.1.6 |
| TC | HRGMv2_1540_8 | HRGMv2_1540_8_20 | 19988 | 21184 | + | 2.A.1.2.18 |
| CAZyme | HRGMv2_1540_8 | HRGMv2_1540_8_21 | 21338 | 22714 | + | GH13_20 |
Gene ID: HRGMv2_1540_8_6
Type: TC
Location: 3001 - 3708 (+)
Type: TC
Location: 3001 - 3708 (+)
Gene ID: HRGMv2_1540_8_7
Type: pfam
Location: 3836 - 4546 (-)
Type: pfam
Location: 3836 - 4546 (-)
Gene ID: HRGMv2_1540_8_8
Type: pfam
Location: 4543 - 6459 (-)
Type: pfam
Location: 4543 - 6459 (-)
Gene ID: HRGMv2_1540_8_9
Type: TC
Location: 6553 - 7320 (-)
Type: TC
Location: 6553 - 7320 (-)
Gene ID: HRGMv2_1540_8_10
Type: pfam
Location: 7449 - 9476 (-)
Type: pfam
Location: 7449 - 9476 (-)
Gene ID: HRGMv2_1540_8_11
Type: TC
Location: 9634 - 10428 (-)
Type: TC
Location: 9634 - 10428 (-)
Gene ID: HRGMv2_1540_8_12
Type: TC
Location: 10421 - 11344 (-)
Type: TC
Location: 10421 - 11344 (-)
Gene ID: HRGMv2_1540_8_13
Type: TC
Location: 11549 - 12529 (-)
Type: TC
Location: 11549 - 12529 (-)
Gene ID: HRGMv2_1540_8_14
Type:
Location: 12690 - 13475 (-)
Type:
Location: 12690 - 13475 (-)
Gene ID: HRGMv2_1540_8_15
Type: pfam
Location: 13724 - 15127 (-)
Type: pfam
Location: 13724 - 15127 (-)
Gene ID: HRGMv2_1540_8_16
Type: TC
Location: 15309 - 15872 (-)
Type: TC
Location: 15309 - 15872 (-)
Gene ID: HRGMv2_1540_8_17
Type: peptidase
Location: 16117 - 17016 (+)
Type: peptidase
Location: 16117 - 17016 (+)
Gene ID: HRGMv2_1540_8_18
Type:
Location: 17064 - 17384 (+)
Type:
Location: 17064 - 17384 (+)
Gene ID: HRGMv2_1540_8_19
Type: TC
Location: 17506 - 19866 (+)
Type: TC
Location: 17506 - 19866 (+)
Gene ID: HRGMv2_1540_8_20
Type: TC
Location: 19988 - 21184 (+)
Type: TC
Location: 19988 - 21184 (+)
Gene ID: HRGMv2_1540_8_21
Type: CAZyme
Location: 21338 - 22714 (+)
Type: CAZyme
Location: 21338 - 22714 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1540_8_10 | vegan > omnivore | 1.81851 | 0.00455 |
| HRGMv2_1540_8_10 | vegetarian > omnivore | 1.37167 | 0.01057 |