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Cluster: HRGMv2_1540_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1540_2 HRGMv2_1540_2_21 21354 22280 - CE7
TC HRGMv2_1540_2 HRGMv2_1540_2_22 22412 23239 - 3.A.1.5.27
TC HRGMv2_1540_2 HRGMv2_1540_2_23 23240 25255 - 3.A.1.5.25
TC HRGMv2_1540_2 HRGMv2_1540_2_24 25259 26215 - 3.A.1.5.38
TC HRGMv2_1540_2 HRGMv2_1540_2_25 26373 27986 - 3.A.1.5.27
pfam HRGMv2_1540_2 HRGMv2_1540_2_26 28352 30292 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1540_2 HRGMv2_1540_2_27 30299 31981 - 2.A.66.4.4
Gene ID: HRGMv2_1540_2_21
Type: CAZyme
Location: 21354 - 22280 (-)
Gene ID: HRGMv2_1540_2_22
Type: TC
Location: 22412 - 23239 (-)
Gene ID: HRGMv2_1540_2_23
Type: TC
Location: 23240 - 25255 (-)
Gene ID: HRGMv2_1540_2_24
Type: TC
Location: 25259 - 26215 (-)
Gene ID: HRGMv2_1540_2_25
Type: TC
Location: 26373 - 27986 (-)
Gene ID: HRGMv2_1540_2_26
Type: pfam
Location: 28352 - 30292 (-)
Gene ID: HRGMv2_1540_2_27
Type: TC
Location: 30299 - 31981 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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