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Cluster: HRGMv2_1540_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1540_28 HRGMv2_1540_28_10 7710 8879 - CE9
STP HRGMv2_1540_28 HRGMv2_1540_28_11 8997 10163 - SIS | SIS
TF HRGMv2_1540_28 HRGMv2_1540_28_12 10278 11009 - GntR
TC HRGMv2_1540_28 HRGMv2_1540_28_13 11194 12276 - 4.A.6.1.4
TC HRGMv2_1540_28 HRGMv2_1540_28_14 12266 13066 - 4.A.6.1.4
TC HRGMv2_1540_28 HRGMv2_1540_28_15 13157 13639 - 4.A.6.1.4
pfam HRGMv2_1540_28 HRGMv2_1540_28_16 13676 13957 - YajC
TC HRGMv2_1540_28 HRGMv2_1540_28_17 13957 14400 - 4.A.6.1.16
Gene ID: HRGMv2_1540_28_10
Type: CAZyme
Location: 7710 - 8879 (-)
Gene ID: HRGMv2_1540_28_11
Type: STP
Location: 8997 - 10163 (-)
Gene ID: HRGMv2_1540_28_12
Type: TF
Location: 10278 - 11009 (-)
Gene ID: HRGMv2_1540_28_13
Type: TC
Location: 11194 - 12276 (-)
Gene ID: HRGMv2_1540_28_14
Type: TC
Location: 12266 - 13066 (-)
Gene ID: HRGMv2_1540_28_15
Type: TC
Location: 13157 - 13639 (-)
Gene ID: HRGMv2_1540_28_16
Type: pfam
Location: 13676 - 13957 (-)
Gene ID: HRGMv2_1540_28_17
Type: TC
Location: 13957 - 14400 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1540_28_16 vegan > omnivore 1.10089 0.00455

🧭 Explore Read Mapping of CGC

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