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Cluster: HRGMv2_1540_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1540_1 HRGMv2_1540_1_21 25035 25373 - 4.A.3.1.2
TF HRGMv2_1540_1 HRGMv2_1540_1_22 25588 26592 - LacI
TC HRGMv2_1540_1 HRGMv2_1540_1_23 26949 28724 + 4.A.3.1.1
CAZyme HRGMv2_1540_1 HRGMv2_1540_1_24 28791 30230 + GH1
TF HRGMv2_1540_1 HRGMv2_1540_1_25 30492 31529 - LacI
CAZyme HRGMv2_1540_1 HRGMv2_1540_1_26 31871 33313 + GH1
TC HRGMv2_1540_1 HRGMv2_1540_1_27 33490 35250 + 4.A.3.1.1
TF HRGMv2_1540_1 HRGMv2_1540_1_28 35585 36595 - LacI
TC HRGMv2_1540_1 HRGMv2_1540_1_29 36871 38649 + 4.A.3.1.1
CAZyme HRGMv2_1540_1 HRGMv2_1540_1_30 38725 40146 + GH1
Gene ID: HRGMv2_1540_1_21
Type: TC
Location: 25035 - 25373 (-)
Gene ID: HRGMv2_1540_1_22
Type: TF
Location: 25588 - 26592 (-)
Gene ID: HRGMv2_1540_1_23
Type: TC
Location: 26949 - 28724 (+)
Gene ID: HRGMv2_1540_1_24
Type: CAZyme
Location: 28791 - 30230 (+)
Gene ID: HRGMv2_1540_1_25
Type: TF
Location: 30492 - 31529 (-)
Gene ID: HRGMv2_1540_1_26
Type: CAZyme
Location: 31871 - 33313 (+)
Gene ID: HRGMv2_1540_1_27
Type: TC
Location: 33490 - 35250 (+)
Gene ID: HRGMv2_1540_1_28
Type: TF
Location: 35585 - 36595 (-)
Gene ID: HRGMv2_1540_1_29
Type: TC
Location: 36871 - 38649 (+)
Gene ID: HRGMv2_1540_1_30
Type: CAZyme
Location: 38725 - 40146 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1540_1_25 vegetarian > omnivore 1.05125 0.01924

🧭 Explore Read Mapping of CGC

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