Cluster: HRGMv2_1539_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1539
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1539_10 | HRGMv2_1539_10_31 | 37296 | 37634 | - | 4.A.3.1.2 |
| TF | HRGMv2_1539_10 | HRGMv2_1539_10_32 | 37848 | 38852 | - | LacI |
| TC | HRGMv2_1539_10 | HRGMv2_1539_10_33 | 39209 | 40984 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_1539_10 | HRGMv2_1539_10_34 | 41050 | 42489 | + | GH1 |
| TF | HRGMv2_1539_10 | HRGMv2_1539_10_35 | 42678 | 43679 | - | LacI |
| TC | HRGMv2_1539_10 | HRGMv2_1539_10_36 | 43964 | 45367 | + | 4.A.3.1.1 |
Gene ID: HRGMv2_1539_10_31
Type: TC
Location: 37296 - 37634 (-)
Type: TC
Location: 37296 - 37634 (-)
Gene ID: HRGMv2_1539_10_32
Type: TF
Location: 37848 - 38852 (-)
Type: TF
Location: 37848 - 38852 (-)
Gene ID: HRGMv2_1539_10_33
Type: TC
Location: 39209 - 40984 (+)
Type: TC
Location: 39209 - 40984 (+)
Gene ID: HRGMv2_1539_10_34
Type: CAZyme
Location: 41050 - 42489 (+)
Type: CAZyme
Location: 41050 - 42489 (+)
Gene ID: HRGMv2_1539_10_35
Type: TF
Location: 42678 - 43679 (-)
Type: TF
Location: 42678 - 43679 (-)
Gene ID: HRGMv2_1539_10_36
Type: TC
Location: 43964 - 45367 (+)
Type: TC
Location: 43964 - 45367 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.