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Cluster: HRGMv2_1539_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1539_83 HRGMv2_1539_83_3 1396 2196 + 9.B.18.1.2
CAZyme HRGMv2_1539_83 HRGMv2_1539_83_4 2196 2972 + GT26
TC HRGMv2_1539_83 HRGMv2_1539_83_5 2973 4031 + 9.B.18.2.1
pfam HRGMv2_1539_83 HRGMv2_1539_83_6 4033 5250 + Epimerase | Polysacc_synt_C
pfam HRGMv2_1539_83 HRGMv2_1539_83_7 5255 6436 + Epimerase_2
CAZyme HRGMv2_1539_83 HRGMv2_1539_83_8 6439 8040 + GT4
CAZyme HRGMv2_1539_83 HRGMv2_1539_83_9 8050 8871 + GT4
Gene ID: HRGMv2_1539_83_3
Type: TC
Location: 1396 - 2196 (+)
Gene ID: HRGMv2_1539_83_4
Type: CAZyme
Location: 2196 - 2972 (+)
Gene ID: HRGMv2_1539_83_5
Type: TC
Location: 2973 - 4031 (+)
Gene ID: HRGMv2_1539_83_6
Type: pfam
Location: 4033 - 5250 (+)
Gene ID: HRGMv2_1539_83_7
Type: pfam
Location: 5255 - 6436 (+)
Gene ID: HRGMv2_1539_83_8
Type: CAZyme
Location: 6439 - 8040 (+)
Gene ID: HRGMv2_1539_83_9
Type: CAZyme
Location: 8050 - 8871 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1539_83_6 vegetarian > omnivore 1.46503 0.04425
HRGMv2_1539_83_6 vegetarian > vegan 1.61168 0.02501

🧭 Explore Read Mapping of CGC

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