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Cluster: HRGMv2_1539_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1539_46 HRGMv2_1539_46_2 1542 2924 - GH4
TC HRGMv2_1539_46 HRGMv2_1539_46_3 2928 4544 - 4.A.1.1.3
pfam HRGMv2_1539_46 HRGMv2_1539_46_4 4644 5510 - PRD | PRD | CAT_RBD
TC HRGMv2_1539_46 HRGMv2_1539_46_5 5517 6029 - 4.A.1.2.5
TC HRGMv2_1539_46 HRGMv2_1539_46_6 6394 8643 - 1.I.1.1.3
STP HRGMv2_1539_46 HRGMv2_1539_46_7 9224 10186 + FHA
STP HRGMv2_1539_46 HRGMv2_1539_46_8 10358 12442 + Pkinase
TC HRGMv2_1539_46 HRGMv2_1539_46_9 12774 15113 + 3.A.3.5.15
Gene ID: HRGMv2_1539_46_2
Type: CAZyme
Location: 1542 - 2924 (-)
Gene ID: HRGMv2_1539_46_3
Type: TC
Location: 2928 - 4544 (-)
Gene ID: HRGMv2_1539_46_4
Type: pfam
Location: 4644 - 5510 (-)
Gene ID: HRGMv2_1539_46_5
Type: TC
Location: 5517 - 6029 (-)
Gene ID: HRGMv2_1539_46_6
Type: TC
Location: 6394 - 8643 (-)
Gene ID: HRGMv2_1539_46_7
Type: STP
Location: 9224 - 10186 (+)
Gene ID: HRGMv2_1539_46_8
Type: STP
Location: 10358 - 12442 (+)
Gene ID: HRGMv2_1539_46_9
Type: TC
Location: 12774 - 15113 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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