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Cluster: HRGMv2_1539_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1539_23 HRGMv2_1539_23_12 10409 11578 - CE9
STP HRGMv2_1539_23 HRGMv2_1539_23_13 11696 12862 - SIS | SIS
TF HRGMv2_1539_23 HRGMv2_1539_23_14 12977 13708 - GntR
TC HRGMv2_1539_23 HRGMv2_1539_23_15 13893 14975 - 4.A.6.1.4
TC HRGMv2_1539_23 HRGMv2_1539_23_16 14965 15765 - 4.A.6.1.4
TC HRGMv2_1539_23 HRGMv2_1539_23_17 15856 16338 - 4.A.6.1.4
pfam HRGMv2_1539_23 HRGMv2_1539_23_18 16375 16656 - YajC
TC HRGMv2_1539_23 HRGMv2_1539_23_19 16656 17099 - 4.A.6.1.16
Gene ID: HRGMv2_1539_23_12
Type: CAZyme
Location: 10409 - 11578 (-)
Gene ID: HRGMv2_1539_23_13
Type: STP
Location: 11696 - 12862 (-)
Gene ID: HRGMv2_1539_23_14
Type: TF
Location: 12977 - 13708 (-)
Gene ID: HRGMv2_1539_23_15
Type: TC
Location: 13893 - 14975 (-)
Gene ID: HRGMv2_1539_23_16
Type: TC
Location: 14965 - 15765 (-)
Gene ID: HRGMv2_1539_23_17
Type: TC
Location: 15856 - 16338 (-)
Gene ID: HRGMv2_1539_23_18
Type: pfam
Location: 16375 - 16656 (-)
Gene ID: HRGMv2_1539_23_19
Type: TC
Location: 16656 - 17099 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1539_23_18 vegan > omnivore 1.08406 0.00701

🧭 Explore Read Mapping of CGC

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