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Cluster: HRGMv2_1538_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1538_5 HRGMv2_1538_5_10 12383 13765 - GH4
TC HRGMv2_1538_5 HRGMv2_1538_5_11 13769 15385 - 4.A.1.1.3
pfam HRGMv2_1538_5 HRGMv2_1538_5_12 15485 16339 - PRD | PRD | CAT_RBD
TC HRGMv2_1538_5 HRGMv2_1538_5_13 16358 16870 - 4.A.1.2.5
STP HRGMv2_1538_5 HRGMv2_1538_5_14 17151 17912 - Fer4
TC HRGMv2_1538_5 HRGMv2_1538_5_15 18534 20744 - 1.I.1.1.3
STP HRGMv2_1538_5 HRGMv2_1538_5_16 21243 22205 + FHA
STP HRGMv2_1538_5 HRGMv2_1538_5_17 22377 24461 + Pkinase
TC HRGMv2_1538_5 HRGMv2_1538_5_18 24875 27217 + 3.A.3.5.15
Gene ID: HRGMv2_1538_5_10
Type: CAZyme
Location: 12383 - 13765 (-)
Gene ID: HRGMv2_1538_5_11
Type: TC
Location: 13769 - 15385 (-)
Gene ID: HRGMv2_1538_5_12
Type: pfam
Location: 15485 - 16339 (-)
Gene ID: HRGMv2_1538_5_13
Type: TC
Location: 16358 - 16870 (-)
Gene ID: HRGMv2_1538_5_14
Type: STP
Location: 17151 - 17912 (-)
Gene ID: HRGMv2_1538_5_15
Type: TC
Location: 18534 - 20744 (-)
Gene ID: HRGMv2_1538_5_16
Type: STP
Location: 21243 - 22205 (+)
Gene ID: HRGMv2_1538_5_17
Type: STP
Location: 22377 - 24461 (+)
Gene ID: HRGMv2_1538_5_18
Type: TC
Location: 24875 - 27217 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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