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Cluster: HRGMv2_1538_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1538_4 HRGMv2_1538_4_46 45909 47285 - GH13_20
TC HRGMv2_1538_4 HRGMv2_1538_4_47 47365 48561 - 2.A.1.2.18
TC HRGMv2_1538_4 HRGMv2_1538_4_48 48683 51043 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1538_4 HRGMv2_1538_4_49 51165 51485 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_1538_4 HRGMv2_1538_4_50 51533 52432 - S09.UPW
TC HRGMv2_1538_4 HRGMv2_1538_4_51 52677 53240 + 4.A.1.2.6
pfam HRGMv2_1538_4 HRGMv2_1538_4_52 53422 54825 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1538_4 HRGMv2_1538_4_53 55075 55860 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1538_4 HRGMv2_1538_4_54 56021 57001 + 3.A.1.34.1
TC HRGMv2_1538_4 HRGMv2_1538_4_55 57206 58129 + 3.A.1.34.1
TC HRGMv2_1538_4 HRGMv2_1538_4_56 58122 58916 + 3.A.1.34.1
pfam HRGMv2_1538_4 HRGMv2_1538_4_57 58989 61019 + Metallophos | 5_nucleotid_C
TC HRGMv2_1538_4 HRGMv2_1538_4_58 61148 61915 + 1.A.23.4.10
Gene ID: HRGMv2_1538_4_46
Type: CAZyme
Location: 45909 - 47285 (-)
Gene ID: HRGMv2_1538_4_47
Type: TC
Location: 47365 - 48561 (-)
Gene ID: HRGMv2_1538_4_48
Type: TC
Location: 48683 - 51043 (-)
Gene ID: HRGMv2_1538_4_49
Type:
Location: 51165 - 51485 (-)
Gene ID: HRGMv2_1538_4_50
Type: peptidase
Location: 51533 - 52432 (-)
Gene ID: HRGMv2_1538_4_51
Type: TC
Location: 52677 - 53240 (+)
Gene ID: HRGMv2_1538_4_52
Type: pfam
Location: 53422 - 54825 (+)
Gene ID: HRGMv2_1538_4_53
Type:
Location: 55075 - 55860 (+)
Gene ID: HRGMv2_1538_4_54
Type: TC
Location: 56021 - 57001 (+)
Gene ID: HRGMv2_1538_4_55
Type: TC
Location: 57206 - 58129 (+)
Gene ID: HRGMv2_1538_4_56
Type: TC
Location: 58122 - 58916 (+)
Gene ID: HRGMv2_1538_4_57
Type: pfam
Location: 58989 - 61019 (+)
Gene ID: HRGMv2_1538_4_58
Type: TC
Location: 61148 - 61915 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1538_4_57 vegan > omnivore 2.00900 0.01033
HRGMv2_1538_4_57 vegetarian > omnivore 1.48623 0.00861

🧭 Explore Read Mapping of CGC

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