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Cluster: HRGMv2_1537_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1537_13 HRGMv2_1537_13_1 628 1071 + 4.A.6.1.16
pfam HRGMv2_1537_13 HRGMv2_1537_13_2 1071 1352 + YajC
TC HRGMv2_1537_13 HRGMv2_1537_13_3 1389 1871 + 4.A.6.1.4
TC HRGMv2_1537_13 HRGMv2_1537_13_4 1962 2762 + 4.A.6.1.4
TC HRGMv2_1537_13 HRGMv2_1537_13_5 2752 3834 + 4.A.6.1.4
TF HRGMv2_1537_13 HRGMv2_1537_13_6 4019 4750 + GntR
STP HRGMv2_1537_13 HRGMv2_1537_13_7 4865 6031 + SIS | SIS
CAZyme HRGMv2_1537_13 HRGMv2_1537_13_8 6149 7318 + CE9
Gene ID: HRGMv2_1537_13_1
Type: TC
Location: 628 - 1071 (+)
Gene ID: HRGMv2_1537_13_2
Type: pfam
Location: 1071 - 1352 (+)
Gene ID: HRGMv2_1537_13_3
Type: TC
Location: 1389 - 1871 (+)
Gene ID: HRGMv2_1537_13_4
Type: TC
Location: 1962 - 2762 (+)
Gene ID: HRGMv2_1537_13_5
Type: TC
Location: 2752 - 3834 (+)
Gene ID: HRGMv2_1537_13_6
Type: TF
Location: 4019 - 4750 (+)
Gene ID: HRGMv2_1537_13_7
Type: STP
Location: 4865 - 6031 (+)
Gene ID: HRGMv2_1537_13_8
Type: CAZyme
Location: 6149 - 7318 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1537_13_2 vegan > omnivore 1.13613 0.00701

🧭 Explore Read Mapping of CGC

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