Cluster: HRGMv2_1536_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1536
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1536_23 | HRGMv2_1536_23_15 | 15030 | 16841 | - | 3.D.1.5.1 |
| STP | HRGMv2_1536_23 | HRGMv2_1536_23_16 | 16835 | 18667 | - | Pyr_redox_2 |
| CAZyme | HRGMv2_1536_23 | HRGMv2_1536_23_17 | 18923 | 20305 | - | GH4 |
| TC | HRGMv2_1536_23 | HRGMv2_1536_23_18 | 20309 | 21925 | - | 4.A.1.1.3 |
| pfam | HRGMv2_1536_23 | HRGMv2_1536_23_19 | 22025 | 22891 | - | PRD | PRD | CAT_RBD |
| TC | HRGMv2_1536_23 | HRGMv2_1536_23_20 | 22898 | 23428 | - | 4.A.1.2.5 |
Gene ID: HRGMv2_1536_23_15
Type: TC
Location: 15030 - 16841 (-)
Type: TC
Location: 15030 - 16841 (-)
Gene ID: HRGMv2_1536_23_16
Type: STP
Location: 16835 - 18667 (-)
Type: STP
Location: 16835 - 18667 (-)
Gene ID: HRGMv2_1536_23_17
Type: CAZyme
Location: 18923 - 20305 (-)
Type: CAZyme
Location: 18923 - 20305 (-)
Gene ID: HRGMv2_1536_23_18
Type: TC
Location: 20309 - 21925 (-)
Type: TC
Location: 20309 - 21925 (-)
Gene ID: HRGMv2_1536_23_19
Type: pfam
Location: 22025 - 22891 (-)
Type: pfam
Location: 22025 - 22891 (-)
Gene ID: HRGMv2_1536_23_20
Type: TC
Location: 22898 - 23428 (-)
Type: TC
Location: 22898 - 23428 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.