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Cluster: HRGMv2_1536_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1536_67 HRGMv2_1536_67_3 2224 2529 + 4.A.3.2.6
TC HRGMv2_1536_67 HRGMv2_1536_67_4 2544 3806 + 4.A.3.2.2
pfam HRGMv2_1536_67 HRGMv2_1536_67_5 4061 4420 - PTS_IIA
CAZyme HRGMv2_1536_67 HRGMv2_1536_67_6 4517 5893 - GH1
TF HRGMv2_1536_67 HRGMv2_1536_67_7 5945 7843 - HTH_11
pfam HRGMv2_1536_67 HRGMv2_1536_67_8 8074 8829 + YdjC
CAZyme HRGMv2_1536_67 HRGMv2_1536_67_9 8922 10166 + GH1
CAZyme HRGMv2_1536_67 HRGMv2_1536_67_10 10236 11663 + GH140
Gene ID: HRGMv2_1536_67_3
Type: TC
Location: 2224 - 2529 (+)
Gene ID: HRGMv2_1536_67_4
Type: TC
Location: 2544 - 3806 (+)
Gene ID: HRGMv2_1536_67_5
Type: pfam
Location: 4061 - 4420 (-)
Gene ID: HRGMv2_1536_67_6
Type: CAZyme
Location: 4517 - 5893 (-)
Gene ID: HRGMv2_1536_67_7
Type: TF
Location: 5945 - 7843 (-)
Gene ID: HRGMv2_1536_67_8
Type: pfam
Location: 8074 - 8829 (+)
Gene ID: HRGMv2_1536_67_9
Type: CAZyme
Location: 8922 - 10166 (+)
Gene ID: HRGMv2_1536_67_10
Type: CAZyme
Location: 10236 - 11663 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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