Cluster: HRGMv2_1536_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1536
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1536_64 | HRGMv2_1536_64_1 | 352 | 2094 | - | 4.A.3.1.1 |
| CAZyme | HRGMv2_1536_64 | HRGMv2_1536_64_2 | 2271 | 3713 | - | GH1 |
| TF | HRGMv2_1536_64 | HRGMv2_1536_64_3 | 4055 | 5092 | + | LacI |
| CAZyme | HRGMv2_1536_64 | HRGMv2_1536_64_4 | 5354 | 6793 | - | GH1 |
| TC | HRGMv2_1536_64 | HRGMv2_1536_64_5 | 6860 | 8635 | - | 4.A.3.1.1 |
| TF | HRGMv2_1536_64 | HRGMv2_1536_64_6 | 8993 | 9997 | + | LacI |
| TC | HRGMv2_1536_64 | HRGMv2_1536_64_7 | 10212 | 10550 | + | 4.A.3.1.2 |
Gene ID: HRGMv2_1536_64_1
Type: TC
Location: 352 - 2094 (-)
Type: TC
Location: 352 - 2094 (-)
Gene ID: HRGMv2_1536_64_2
Type: CAZyme
Location: 2271 - 3713 (-)
Type: CAZyme
Location: 2271 - 3713 (-)
Gene ID: HRGMv2_1536_64_3
Type: TF
Location: 4055 - 5092 (+)
Type: TF
Location: 4055 - 5092 (+)
Gene ID: HRGMv2_1536_64_4
Type: CAZyme
Location: 5354 - 6793 (-)
Type: CAZyme
Location: 5354 - 6793 (-)
Gene ID: HRGMv2_1536_64_5
Type: TC
Location: 6860 - 8635 (-)
Type: TC
Location: 6860 - 8635 (-)
Gene ID: HRGMv2_1536_64_6
Type: TF
Location: 8993 - 9997 (+)
Type: TF
Location: 8993 - 9997 (+)
Gene ID: HRGMv2_1536_64_7
Type: TC
Location: 10212 - 10550 (+)
Type: TC
Location: 10212 - 10550 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1536_64_3 | vegetarian > omnivore | 1.08385 | 0.02242 |