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Cluster: HRGMv2_1535_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1535_28 HRGMv2_1535_28_3 1921 2847 - CE7
TC HRGMv2_1535_28 HRGMv2_1535_28_4 2979 3806 - 3.A.1.5.27
TC HRGMv2_1535_28 HRGMv2_1535_28_5 3807 5822 - 3.A.1.5.25
TC HRGMv2_1535_28 HRGMv2_1535_28_6 5826 6782 - 3.A.1.5.38
TC HRGMv2_1535_28 HRGMv2_1535_28_7 6940 8553 - 3.A.1.5.27
pfam HRGMv2_1535_28 HRGMv2_1535_28_8 8919 10859 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1535_28 HRGMv2_1535_28_9 10866 12548 - 2.A.66.4.4
Gene ID: HRGMv2_1535_28_3
Type: CAZyme
Location: 1921 - 2847 (-)
Gene ID: HRGMv2_1535_28_4
Type: TC
Location: 2979 - 3806 (-)
Gene ID: HRGMv2_1535_28_5
Type: TC
Location: 3807 - 5822 (-)
Gene ID: HRGMv2_1535_28_6
Type: TC
Location: 5826 - 6782 (-)
Gene ID: HRGMv2_1535_28_7
Type: TC
Location: 6940 - 8553 (-)
Gene ID: HRGMv2_1535_28_8
Type: pfam
Location: 8919 - 10859 (-)
Gene ID: HRGMv2_1535_28_9
Type: TC
Location: 10866 - 12548 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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