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Cluster: HRGMv2_1534_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1534_25 HRGMv2_1534_25_3 1992 3674 + 2.A.66.4.4
pfam HRGMv2_1534_25 HRGMv2_1534_25_4 3681 5621 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1534_25 HRGMv2_1534_25_5 5987 7600 + 3.A.1.5.27
TC HRGMv2_1534_25 HRGMv2_1534_25_6 7758 8714 + 3.A.1.5.38
TC HRGMv2_1534_25 HRGMv2_1534_25_7 8718 10733 + 3.A.1.5.25
TC HRGMv2_1534_25 HRGMv2_1534_25_8 10734 11561 + 3.A.1.5.27
CAZyme HRGMv2_1534_25 HRGMv2_1534_25_9 11693 12619 + CE7
Gene ID: HRGMv2_1534_25_3
Type: TC
Location: 1992 - 3674 (+)
Gene ID: HRGMv2_1534_25_4
Type: pfam
Location: 3681 - 5621 (+)
Gene ID: HRGMv2_1534_25_5
Type: TC
Location: 5987 - 7600 (+)
Gene ID: HRGMv2_1534_25_6
Type: TC
Location: 7758 - 8714 (+)
Gene ID: HRGMv2_1534_25_7
Type: TC
Location: 8718 - 10733 (+)
Gene ID: HRGMv2_1534_25_8
Type: TC
Location: 10734 - 11561 (+)
Gene ID: HRGMv2_1534_25_9
Type: CAZyme
Location: 11693 - 12619 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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